Literature DB >> 10366664

REPuter: fast computation of maximal repeats in complete genomes.

S Kurtz1, C Schleiermacher.   

Abstract

SUMMARY: A software tool was implemented that computes exact repeats and palindromes in entire genomes very efficiently. AVAILABILITY: Via the Bielefeld Bioinformatics Server (http://bibiserv.techfak.uni-bielefeld.de/rep uter/).

Mesh：

Substances：

Year:  1999        PMID： 10366664     DOI： 10.1093/bioinformatics/15.5.426

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  135 in total

1.  MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.

Authors:  T Gaasterland; A Sczyrba; E Thomas; G Aytekin-Kurban; P Gordon; C W Sensen
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

2.  REPuter: the manifold applications of repeat analysis on a genomic scale.

Authors:  S Kurtz; J V Choudhuri; E Ohlebusch; C Schleiermacher; J Stoye; R Giegerich
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

3.  Over-representation of repeats in stress response genes: a strategy to increase versatility under stressful conditions?

Authors:  Eduardo P C Rocha; Ivan Matic; François Taddei
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

4.  The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice.

Authors:  Klaas Vandepoele; Yvan Saeys; Cedric Simillion; Jeroen Raes; Yves Van De Peer
Journal:  Genome Res       Date:  2002-11       Impact factor: 9.043

5.  Mastering seeds for genomic size nucleotide BLAST searches.

Authors:  Valer Gotea; Vamsi Veeramachaneni; Wojciech Makałowski
Journal:  Nucleic Acids Res       Date:  2003-12-01       Impact factor: 16.971

6.  Origin and fate of repeats in bacteria.

Authors:  G Achaz; E P C Rocha; P Netter; E Coissac
Journal:  Nucleic Acids Res       Date:  2002-07-01       Impact factor: 16.971

7.  In silico identification of putative regulatory sequence elements in the 5'-untranslated region of genes that are expressed during male gametogenesis.

Authors:  Raymond Jozef Maurinus Hulzink; Han Weerdesteyn; Anton Felix Croes; Tom Gerats; Marinus Maria Antonius van Herpen; Jacques van Helden
Journal:  Plant Physiol       Date:  2003-05       Impact factor: 8.340

8.  An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: from duplications to genome reduction.

Authors:  Eduardo P C Rocha
Journal:  Genome Res       Date:  2003-05-12       Impact factor: 9.043

9.  Hierarchical scaffolding with Bambus.

Authors:  Mihai Pop; Daniel S Kosack; Steven L Salzberg
Journal:  Genome Res       Date:  2004-01       Impact factor: 9.043

10.  Extensive repetitive DNA facilitates prokaryotic genome plasticity.

Authors:  Rahul A Aras; Josephine Kang; Ariane I Tschumi; Yasuaki Harasaki; Martin J Blaser
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-30       Impact factor: 11.205
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