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Literature DB >> 33457978

The complete plastid genome sequence of Gleditsia sinensis, an ancient medicinal tree in China.

Ji-Qing Bai^1,2, Lei Yang², Su Gao², Wei-Feng Zhu¹, Lu-Qi Huang³.

Abstract

Gleditsia sinensis Lam. (Leguminosae) is an ancient medicinal tree in China. In this study, we first characterized the whole plastid genome sequence using the illumination sequencing technology. The length of the plastid genome was 163,151 bp, including the large single copy (LSC) region of 91,515 bp, the small single copy (SSC) region of 19,250 bp, and two reversed duplicate regions (IR) of each 26,193 bp. The genome of G. sinensis contains 130 genes, including 85 protein-coding genes, 37 transfer RNA (tRNA) and 8 ribosomal RNA (rRNA). Phylogenetic analysis showed that G. sinensis was placed as a sister to the congeneric G. japonica.

Entities: Disease Species

Keywords: Gleditsia sinensis; plastid genome phylogenetic analysis

Year: 2020 PMID： 33457978 PMCID： PMC7782700 DOI： 10.1080/23802359.2020.1791018

Source DB: PubMed Journal: Mitochondrial DNA B Resour ISSN： 2380-2359 Impact factor: 0.658

7 in total

1. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.

Authors: Bastien Chevreux; Thomas Pfisterer; Bernd Drescher; Albert J Driesel; Werner E G Müller; Thomas Wetter; Sándor Suhai
Journal: Genome Res Date: 2004-05-12 Impact factor: 9.043

2. The complete chloroplast genome sequence of the medicinal plant Rheum palmatum L. (Polygonaceae).

Authors: Kai Fan; Xiao-Jie Sun; Min Huang; Xu-Mei Wang
Journal: Mitochondrial DNA A DNA Mapp Seq Anal Date: 2015-07-08 Impact factor: 1.514

3. Chemical constituents from the thorns of Gleditsia sinensis and their cytotoxic activities.

Authors: Yu-Bo Zhang; Kar-Ho Lam; Li-Feng Chen; Hei Wan; Guo-Cai Wang; Kai-Fai Lee; Chun-Wang Yip; Kwun-Hung Liu; Pak-Heng Leung; Hai-Yong Chan; Yi-Gang Shi; Jia Zhao; Li-Xing Lao; Yao-Lan Li; Yan-Bo Zhang; Wei Meng
Journal: J Asian Nat Prod Res Date: 2020-04-15 Impact factor: 1.569

7. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.

Authors: Christoph Hahn; Lutz Bachmann; Bastien Chevreux
Journal: Nucleic Acids Res Date: 2013-05-09 Impact factor: 16.971

7 in total

The complete plastid genome sequence of Gleditsia sinensis, an ancient medicinal tree in China.

1. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.

2. The complete chloroplast genome sequence of the medicinal plant Rheum palmatum L. (Polygonaceae).

3. Chemical constituents from the thorns of Gleditsia sinensis and their cytotoxic activities.

4. MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

5. Characterization of the complete chloroplast genome of medicinal plant Rheum officinale (Polygonaceae).

6. The complete chloroplast genome of Forsythia mira, an endemic medicinal shrub in China.

7. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.