Literature DB >> 33457833

Characterization of the complete chloroplast genome of Apocynum venetum L. (Apocynaceae).

Mary Ann C Bautista1,2,3, Zhongqi Xiao4, Yan Zheng2, Shenyu Miao5, Yunfei Deng1,3, Tao Chen2,3.   

Abstract

Apocynum venetum L. (Apocynaceae) or Luobuma is a widely known traditional medicine use to treat hypertension, relieve anxiety, soothe the nerves and promote diuresis. In this study, the complete chloroplast genome of this medicinal plant was determined through Illumina sequencing method. The A. venetum cp genome is 150,897 bp in length, containing a small single copy region (17,256 bp), a large single copy region (81,957 bp), and a pair of IR regions (25,842 bp). It encodes for a total of 131 genes, including 86 protein-coding genes, 8 rRNA genes, and 37 tRNA genes. Phylogenetic analysis also reveals that A. venetum is relatively close to Aganosma cymosa.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Apocynaceae; Apocynum venetum; chloroplast genome; phylogenetic analysis

Year:  2020        PMID: 33457833      PMCID: PMC7782556          DOI: 10.1080/23802359.2020.1780171

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.

Authors:  Sergey Nurk; Anton Bankevich; Dmitry Antipov; Alexey A Gurevich; Anton Korobeynikov; Alla Lapidus; Andrey D Prjibelski; Alexey Pyshkin; Alexander Sirotkin; Yakov Sirotkin; Ramunas Stepanauskas; Scott R Clingenpeel; Tanja Woyke; Jeffrey S McLean; Roger Lasken; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2013-10       Impact factor: 1.479

Review 2.  Botany, traditional uses, phytochemistry and pharmacology of Apocynum venetum L. (Luobuma): A review.

Authors:  Wenyan Xie; Xiaoying Zhang; Tian Wang; Jianjun Hu
Journal:  J Ethnopharmacol       Date:  2012-03-06       Impact factor: 4.360

3.  tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.

Authors:  Patricia P Chan; Todd M Lowe
Journal:  Methods Mol Biol       Date:  2019

4.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

5.  Genomic Survey, Transcriptome, and Metabolome Analysis of Apocynum venetum and Apocynum hendersonii to Reveal Major Flavonoid Biosynthesis Pathways.

Authors:  Gang Gao; Ping Chen; Jikang Chen; Kunmei Chen; Xiaofei Wang; Aminu Shehu Abubakar; Ning Liu; Chunming Yu; Aiguo Zhu
Journal:  Metabolites       Date:  2019-12-05

6.  CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.

Authors:  Chang Liu; Linchun Shi; Yingjie Zhu; Haimei Chen; Jianhui Zhang; Xiaohan Lin; Xiaojun Guan
Journal:  BMC Genomics       Date:  2012-12-20       Impact factor: 3.969

  6 in total

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