Literature DB >> 33457767

The complete chloroplast genome of Camellia gauchowensis and its phylogenetic analysis.

Yuanlan Zhang1, Guibin Wang2.   

Abstract

Camellia gauchowensis is an economic woody edible oil tree species with high yield per unit area and high ornamental value, which is commonly cultivated in the south of China. The complete chloroplast (cp) genome of C. gauchowensis was assembled and annotated based on the Illumina pair-end sequencing. The whole cp genome of C. gauchowensis is 157,004 bp in size and comprises of a large single-copy (LSC) region of 86,657 bp and a small single-copy (SSC) region of 18,297 bp separated by a pair of inverted repeat (IR) regions of 26,025 bp each. It encodes a total of 129 genes, including 81 protein-coding genes, 5 ribosomal RNA genes, and 43 transfer RNA genes. The neighbor-joining phylogenetic analysis shows that C. gauchowensis is evolutionarily closest to C. cuspidata.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Camellia gauchowensis; chloroplast genome; phylogenetic analysis

Year:  2020        PMID: 33457767      PMCID: PMC7782028          DOI: 10.1080/23802359.2020.1772694

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  Automatic annotation of organellar genomes with DOGMA.

Authors:  Stacia K Wyman; Robert K Jansen; Jeffrey L Boore
Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

2.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

3.  Organellar genome assembly methods and comparative analysis of horticultural plants.

Authors:  Xuelin Wang; Feng Cheng; Dekai Rohlsen; Changwei Bi; Chunyan Wang; Yiqing Xu; Suyun Wei; Qiaolin Ye; Tongming Yin; Ning Ye
Journal:  Hortic Res       Date:  2018-01-10       Impact factor: 6.793

4.  Rapid Determination of the Oil and Moisture Contents in Camellia gauchowensis Chang and Camellia semiserrata Chi Seeds Kernels by Near-infrared Reflectance Spectroscopy.

Authors:  Yingzhong Zhang; Liangbo Zhang; Jing Wang; Xuxiao Tang; Hong Wu; Minghuai Wang; Wu Zeng; Qihui Mo; Yongquan Li; Jianwei Li; Yijuan Huang; Baohua Xu; Mengyu Zhang
Journal:  Molecules       Date:  2018-09-12       Impact factor: 4.411

5.  Characterization of the complete chloroplast genome of Camellia brevistyla, an oil-rich and evergreen shrub.

Authors:  Yupeng Wang; Jiyuan Li; Zhengqi Fan; Dongyang Wu; Hengfu Yin; Xinlei Li
Journal:  Mitochondrial DNA B Resour       Date:  2020-01-21       Impact factor: 0.658

6.  Characterization and phylogenetic significance of the complete chloroplast genome of Camellia Kissii, an economic crop for producing oil.

Authors:  Lei Cao; Jiyuan Li; Zhengqi Fan; Hengfu Yin; Xinlei Li
Journal:  Mitochondrial DNA B Resour       Date:  2020-01-07       Impact factor: 0.658

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.