Literature DB >> 33457746

The complete chloroplast genome sequence of actinidia valvata.

Yi-Ting Chen1, Rui-Lian Lai1, Chun-Zhen Cheng2, Min-Xia Gao1, Wen-Guang Chen1, Ru-Jian Wu1, Xin Feng1.   

Abstract

In this study, we first presented the complete chloroplast genome of Actinidia valvata by using Illumina Novaseq sequencing. Its complete chloroplast genome is 156,596 bp in length, containing a large single copy region of 88,477 bp and a small single copy region of 20,379 bp separated by a pair of inverted repeat regions of 23,870 bp. The chloroplast genome contains 112 unique genes, including 78 protein-coding genes, 30 tRNA, and four rRNA genes. Phylogenetic analysis based on chloroplast genome sequences of ten plants from the family Actinidiaceae showed that A. valvata is more closely related to A. polygama than other members.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Actinidia valvata; chloroplast genome; phylogenetic analysis

Year:  2020        PMID: 33457746      PMCID: PMC7782910          DOI: 10.1080/23802359.2020.1764402

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

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Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

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Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
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3.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

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Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

4.  The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis.

Authors:  Xiaohong Yao; Ping Tang; Zuozhou Li; Dawei Li; Yifei Liu; Hongwen Huang
Journal:  PLoS One       Date:  2015-06-05       Impact factor: 3.240

5.  The complete chloroplast genome sequence of Actinidia Rufa (Actinidiaceae).

Authors:  Sang-Chul Kim; Jei-Wan Lee; Seung-Hoon Baek; Min-Woo Lee; Young-Je Kang
Journal:  Mitochondrial DNA B Resour       Date:  2018-05-09       Impact factor: 0.658

6.  The complete chloroplast genome of Actinidia macrosperma.

Authors:  Yi Chen; Yiqing Xu; Kai Zhang; Yanlin Song; Qiuyu He; Qiuyu Qian; Jian Xu
Journal:  Mitochondrial DNA B Resour       Date:  2019-11-21       Impact factor: 0.658

  6 in total
  1 in total

1.  The comparative studies of complete chloroplast genomes in Actinidia (Actinidiaceae): novel insights into heterogenous variation, clpP gene annotation and phylogenetic relationships.

Authors:  Linchao Wang; Bo Liu; Yuruo Yang; Qiguo Zhuang; Shijia Chen; Yongsheng Liu; Shengxiong Huang
Journal:  Mol Genet Genomics       Date:  2022-02-17       Impact factor: 3.291

  1 in total

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