Literature DB >> 33452398

Comprehensive computational target fishing approach to identify Xanthorrhizol putative targets.

Muhammad Shahid1, Ahmad Azfaralariff1, Douglas Law1, Ahmed Abdulkareem Najm1, Siti Aisyah Sanusi1, Seng Joe Lim1,2, Yew Hoong Cheah3, Shazrul Fazry4,5,6.   

Abstract

Xanthorrhizol (XNT), is a bioactive compound found in Curcuma xanthorrhiza Roxb. This study aimed to determine the potential targets of the XNT via computational target fishing method. This compound obeyed Lipinski's and Veber's rules where it has a molecular weight (MW) of 218.37 gmol-1, TPSA of 20.23, rotatable bonds (RBN) of 4, hydrogen acceptor and donor ability is 1 respectively. Besides, it also has half-life (HL) values 3.5 h, drug-likeness (DL) value of 0.07, oral bioavailability (OB) of 32.10, and blood-brain barrier permeability (BBB) value of 1.64 indicating its potential as therapeutic drug. Further, 20 potential targets were screened out through PharmMapper and DRAR-CPI servers. Co-expression results derived from GeneMANIA revealed that these targets made connection with a total of 40 genes and have 744 different links. Four genes which were RXRA, RBP4, HSD11B1 and AKR1C1 showed remarkable co-expression and predominantly involved in steroid metabolic process. Furthermore, among these 20 genes, 13 highly expressed genes associated with xenobiotics by cytochrome P450, chemical carcinogenesis and steroid metabolic pathways were identified through gene ontology (GO) and KEGG pathway analysis. In conclusion, XNT is targeting multiple proteins and pathways which may be exploited to shape a network that exerts systematic pharmacological effects.

Entities:  

Year:  2021        PMID: 33452398      PMCID: PMC7810825          DOI: 10.1038/s41598-021-81026-9

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  51 in total

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3.  Xanthorrhizol induced DNA fragmentation in HepG2 cells involving Bcl-2 family proteins.

Authors:  Thiam-Tsui Tee; Yew-Hoong Cheah; Nallappan Meenakshii; Mohd Yusof Mohd Sharom; Lope Pihie Azimahtol Hawariah
Journal:  Biochem Biophys Res Commun       Date:  2012-03-23       Impact factor: 3.575

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Authors:  Yew Hoong Cheah; Fariza Juliana Nordin; Thiam Tsui Tee; Hawariah Lope Pihie Azimahtol; Noor Rain Abdullah; Zakiah Ismail
Journal:  Anticancer Res       Date:  2008 Nov-Dec       Impact factor: 2.480

5.  DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical-protein interactome.

Authors:  Heng Luo; Jian Chen; Leming Shi; Mike Mikailov; Huang Zhu; Kejian Wang; Lin He; Lun Yang
Journal:  Nucleic Acids Res       Date:  2011-05-10       Impact factor: 16.971

6.  A novel systems pharmacology model for herbal medicine injection: a case using Reduning injection.

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Authors:  Antoine Daina; Olivier Michielin; Vincent Zoete
Journal:  Sci Rep       Date:  2017-03-03       Impact factor: 4.379

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Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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  3 in total

1.  Pharmacological Inhibition of Endogenous Hydrogen Sulfide Attenuates Breast Cancer Progression.

Authors:  Nazeer Hussain Khan; Di Wang; Wenkang Wang; Muhammad Shahid; Saadullah Khattak; Ebenezeri Erasto Ngowi; Muhammad Sarfraz; Xin-Ying Ji; Chun-Yang Zhang; Dong-Dong Wu
Journal:  Molecules       Date:  2022-06-23       Impact factor: 4.927

2.  Anti-breast cancer synthetic peptides derived from the Anabas testudineus skin mucus fractions.

Authors:  Ahmed Abdul Kareem Najm; Ahmad Azfaralariff; Herryawan Ryadi Eziwar Dyari; Babul Airianah Othman; Muhammad Shahid; Nahid Khalili; Douglas Law; Sharifah Sakinah Syed Alwi; Shazrul Fazry
Journal:  Sci Rep       Date:  2021-11-30       Impact factor: 4.379

3.  TAIGET: A small-molecule target identification and annotation web server.

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Journal:  Front Pharmacol       Date:  2022-08-29       Impact factor: 5.988

  3 in total

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