Literature DB >> 33450253

The C-terminal Domain of piggyBac Transposase Is Not Required for DNA Transposition.

Laura Helou1, Linda Beauclair1, Hugues Dardente1, Peter Arensburger2, Nicolas Buisine3, Yan Jaszczyszyn4, Florian Guillou1, Thierry Lecomte5, Alex Kentsis6, Yves Bigot7.   

Abstract

PiggyBac(PB)-like elements (pble) are members of a eukaryotic DNA transposon family. This family is of interest to evolutionary genomics because pble transposases have been domesticated at least 9 times in vertebrates. The amino acid sequence of pble transposases can be split into three regions: an acidic N-terminal domain (~100 aa), a central domain (~400 aa) containing a DD[D/E] catalytic triad, and a cysteine-rich domain (CRD; ~90 aa). Two recent reports suggested that a functional CRD is required for pble transposase activity. Here we found that two CRD-deficient pble transposases, a PB variant and an isoform encoded by the domesticated PB-derived vertebrate transposase gene 5 (pgbd5) trigger transposition of the Ifp2 pble. When overexpressed in HeLa cells, these CRD-deficient transposases can insert Ifp2 elements with proper and improper transposon ends, associated with deleterious effects on cells. Finally, we found that mouse CRD-deficient transposase Pgbd5, as well as PB, do not insert pbles at random into chromosomes. Transposition events occurred more often in genic regions, in the neighbourhood of the transcription start sites and were often found in genes predominantly expressed in the human central nervous system.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNA cleavage; insertion preference; neuron; transposon; vertebrate

Mesh:

Substances:

Year:  2021        PMID: 33450253      PMCID: PMC8426422          DOI: 10.1016/j.jmb.2020.166805

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  48 in total

1.  Analysis of the cis-acting DNA elements required for piggyBac transposable element excision.

Authors:  T A Elick; N Lobo; M J Fraser
Journal:  Mol Gen Genet       Date:  1997-08

Review 2.  A survey of transposable element classification systems--a call for a fundamental update to meet the challenge of their diversity and complexity.

Authors:  Benoît Piégu; Solenne Bire; Peter Arensburger; Yves Bigot
Journal:  Mol Phylogenet Evol       Date:  2015-03-20       Impact factor: 4.286

3.  The piggyBac transposon displays local and distant reintegration preferences and can cause mutations at noncanonical integration sites.

Authors:  Meng Amy Li; Stephen J Pettitt; Sabine Eckert; Zemin Ning; Stephen Rice; Juan Cadiñanos; Kosuke Yusa; Nathalie Conte; Allan Bradley
Journal:  Mol Cell Biol       Date:  2013-01-28       Impact factor: 4.272

4.  Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.

Authors:  Helga Thorvaldsdóttir; James T Robinson; Jill P Mesirov
Journal:  Brief Bioinform       Date:  2012-04-19       Impact factor: 11.622

5.  Genome-wide Profiling Reveals Remarkable Parallels Between Insertion Site Selection Properties of the MLV Retrovirus and the piggyBac Transposon in Primary Human CD4(+) T Cells.

Authors:  Andreas Gogol-Döring; Ismahen Ammar; Saumyashree Gupta; Mario Bunse; Csaba Miskey; Wei Chen; Wolfgang Uckert; Thomas F Schulz; Zsuzsanna Izsvák; Zoltán Ivics
Journal:  Mol Ther       Date:  2016-01-12       Impact factor: 11.454

6.  Comparative analysis of chimeric ZFP-, TALE- and Cas9-piggyBac transposases for integration into a single locus in human cells.

Authors:  Wentian Luo; Daniel L Galvan; Lauren E Woodard; Dan Dorset; Shawn Levy; Matthew H Wilson
Journal:  Nucleic Acids Res       Date:  2017-08-21       Impact factor: 16.971

7.  Molecular Evolution of piggyBac Superfamily: From Selfishness to Domestication.

Authors:  Maryem Bouallègue; Jacques-Deric Rouault; Aurélie Hua-Van; Mohamed Makni; Pierre Capy
Journal:  Genome Biol Evol       Date:  2017-02-01       Impact factor: 3.416

8.  PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix.

Authors:  Giovanna Ambrosini; Romain Groux; Philipp Bucher
Journal:  Bioinformatics       Date:  2018-07-15       Impact factor: 6.937

9.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

10.  Sequence-specific DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase.

Authors:  Nelly Morellet; Xianghong Li; Silke A Wieninger; Jennifer L Taylor; Julien Bischerour; Séverine Moriau; Ewen Lescop; Benjamin Bardiaux; Nathalie Mathy; Nadine Assrir; Mireille Bétermier; Michael Nilges; Alison B Hickman; Fred Dyda; Nancy L Craig; Eric Guittet
Journal:  Nucleic Acids Res       Date:  2018-03-16       Impact factor: 16.971

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