Literature DB >> 33444343

Ten simple rules for tackling your first mathematical models: A guide for graduate students by graduate students.

Korryn Bodner1,2, Chris Brimacombe2, Emily S Chenery3, Ariel Greiner2, Anne M McLeod4, Stephanie R Penk1,2, Juan S Vargas Soto1,2.   

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Year:  2021        PMID： 33444343      PMCID： PMC7808623          DOI： 10.1371/journal.pcbi.1008539

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN： 1553-734X            Impact factor:   4.475


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  13 in total

1.  Simulation as experiment: a philosophical reassessment for biological modeling.

Authors:  Steven L Peck
Journal:  Trends Ecol Evol       Date:  2004-10       Impact factor: 17.712

2.  Verification, validation, and confirmation of numerical models in the Earth sciences.

Authors:  N Oreskes; K Shrader-Frechette; K Belitz
Journal:  Science       Date:  1994-02-04       Impact factor: 47.728

Review 3.  A methodology for performing global uncertainty and sensitivity analysis in systems biology.

Authors:  Simeone Marino; Ian B Hogue; Christian J Ray; Denise E Kirschner
Journal:  J Theor Biol       Date:  2008-04-20       Impact factor: 2.691

Review 4.  Respectful Modeling: Addressing Uncertainty in Dynamic System Models for Molecular Biology.

Authors:  Areti Tsigkinopoulou; Syed Murtuza Baker; Rainer Breitling
Journal:  Trends Biotechnol       Date:  2017-01-13       Impact factor: 19.536

5.  Computational ecology as an emerging science.

Authors:  Sergei Petrovskii; Natalia Petrovskaya
Journal:  Interface Focus       Date:  2012-01-05       Impact factor: 3.906

6.  Informing management decisions for ecological networks, using dynamic models calibrated to noisy time-series data.

Authors:  Matthew P Adams; Scott A Sisson; Kate J Helmstedt; Christopher M Baker; Matthew H Holden; Michaela Plein; Jacinta Holloway; Kerrie L Mengersen; Eve McDonald-Madden
Journal:  Ecol Lett       Date:  2020-01-27       Impact factor: 9.492

7.  Forecasting seasonal influenza with a state-space SIR model.

Authors:  Dave Osthus; Kyle S Hickmann; Petruţa C Caragea; Dave Higdon; Sara Y Del Valle
Journal:  Ann Appl Stat       Date:  2017-04-08       Impact factor: 2.083

8.  Ten simple rules for biologists learning to program.

Authors:  Maureen A Carey; Jason A Papin
Journal:  PLoS Comput Biol       Date:  2018-01-04       Impact factor: 4.475

9.  Estimation in emerging epidemics: biases and remedies.

Authors:  Tom Britton; Gianpaolo Scalia Tomba
Journal:  J R Soc Interface       Date:  2019-01-31       Impact factor: 4.118

10.  Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.

Authors:  Adam Rule; Amanda Birmingham; Cristal Zuniga; Ilkay Altintas; Shih-Cheng Huang; Rob Knight; Niema Moshiri; Mai H Nguyen; Sara Brin Rosenthal; Fernando Pérez; Peter W Rose
Journal:  PLoS Comput Biol       Date:  2019-07-25       Impact factor: 4.475
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  1 in total

1.  Ten simple rules for getting started with statistics in graduate school.

Authors:  Rachel A Zitomer; Jessica Karr; Mark Kerstens; Lindsey Perry; Kayla Ruth; Lindsay Adrean; Suzanne Austin; Jamie Cornelius; Jonathan Dachenhaus; Jonathan Dinkins; Alan Harrington; Hankyu Kim; Terrah Owens; Claire Revekant; Vanessa Schroeder; Chelsea Sink; Jonathon J Valente; Ethan Woodis; James W Rivers
Journal:  PLoS Comput Biol       Date:  2022-04-21       Impact factor: 4.779
  1 in total

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