Substituent-Controlled Tailoring of Chalcogen-Bonded Supramolecular Nanoribbons in the Solid State.

In this work, we design and synthesize supramolecular 2,5-substituted chalcogenazolo[5,4-β]pyridine (CGP) synthons arranging in supramolecular ribbons at the solid state. A careful choice of the combination of substituents at the 2- and 5-positions on the CGP scaffold is outlined to accomplish supramolecular materials by means of multiple hybrid interactions, comprising both chalcogen and hydrogen bonds. Depending on the steric and electronic properties of the substituents, different solid-state arrangements have been achieved. Among the different moieties on the 5-position, an oxazole unit has been incorporated on the Se- and Te-congeners by Pd-catalyzed cross-coupling reaction and a supramolecular ribbon-like organization was consistently obtained at the solid state.

Introduction

In recent years, crystal engineering has soared interest in n class="Chemical">the scientific community, given its valuable implications in the rational design of functional materials.[1−5] Several studies have focused on the use of supramolecular bonds, selectively involving recognition motifs to generate stable and predictable multidimensional networks in the solid state.[6−10] Among the several noncovalent interactions, hydrogen bonds embody the main interaction occurring in biological systems,[11,12] as well as being used for many applications in chemistry and materials science.[13−16] However, over the past decades, there has been a flourishing interest for a class of exotic noncovalent interactions, namely, Secondary Bonding Interactions (SBIs),[17] as attractive alternatives to the ubiquitous hydrogen bond in crystal engineering. SBIs’ nature relies on electrostatic (explained in terms of σ-holes)[18] and van der Waals contributions, as well as on orbital mixing described as n2(Y)→σ*(E-X) donation (X-E···Y), which involves nonbonding electrons of the electron-donating atom Y and the empty antibonding located on the E atom.[19] When the central polarizable E atom belongs to Group VI of the periodic table, the term chalcogen bonding (EB, known also as ChB) is used to describe the interaction between a positively polarized chalcogen atom and a Lewis base.[20−22] Despite recent developments in catalysis[23−28] and sensing,[25,30] EB interactions have been mainly exploited in crystal engineering,[31,32] providing a distinctive series of persistent recognition motifs.[33−36] The structure of the most part of these chalcogen-bonding synthons builds on a heterocyclic scaffold, in which the chalcogen bond donors and acceptors are proximal to each other,[37−39] thus effectively developing macrocyclic[40−42] and wire-like[43,44] supramolecular architectures. Previous work done in our group with 2-substituted benzo-1,3-chalcogenazoles described the formation of polymeric structures achieved through single EB interactions.[45,46] When using the chalcogenazolo[5,4-β]pyridine (CGP) module, frontal double chalcogen bonds are obtained in the solid state with high recognition fidelity when the Te chalcogen is used.[47] Notably, changing the derivatization in the 2-position of the CGP ring has allowed the complexity of the molecular assembly to be expanded, engineering organic solids through the co-crystallization of heteromolecular supramolecular polymers, held by concurring chalcogen- and halogen-bonding interactions.[48] Building on these results, in this work, we pursue the idea of expanding the functionalization space of the CGP module in the 5-position. This would allow face-to-face dimer association to be disrupted and originate new recognition modes in the solid state (see Figure ).

Figure 1

Representation of the design of 2- and 5-substituted CGP scaffold with the recognition modes expected by modulating the repulsive interactions (e.g., steric or electrostatic) between the 2- and the 5-substituents (i.e., green and orange): frontal EB dimers (A), head-to-tail ribbon- (B) and wire-like (C) organizations.

Representatioical">n of n class="Chemical">the design of 2- and 5-substituted CGP scaffold with the recognition modes expected by modulating the repulsive interactions (e.g., steric or electrostatic) between the 2- and the 5-substituents (i.e., green and orange): frontal EB dimers (A), head-to-tail ribbon- (B) and wire-like (C) organizations.

Design of 2- and 5-Substituted CGP Derivatives

We conjectured that, depenn class="Disease">ding on the electronic and steric properties of the substituents in the 2- and 5-positions, one could disrupt the typical doubly chalcogen-bonded recognition of a CGP-based derivative (recognition mode A, Figure ) and force the module to associate in a different fashion. For instance, if the substituent in the 5-position (orange) sterically clashes with that in the 2-position (green) in the frontal arrangement, one could envisage that a head-to-tail recognition mode is favored (e.g., B and C modes displayed in Figure ). In this arrangement, an EB is established between the N atom of the chalcogenazole ring (Nc) and the chalcogen atom of a neighboring CGP moiety. If no homo-repulsions are present between the substituents in the 2-position (green), a noncovalent ribbon-like organization, held together by a combination of frontal hydrogen- and chalcogen-bonding interactions, is expected to develop (mode B, Figure ). Finally, if all substituents would undergo homo- and hetero-repulsions in the frontal arrangements, then the only possibility would be for the motif to assemble into nonplanar chalcogen-bonded wire-like assemblies (mode C, Figure ), as previously observed by us.[46] Aiming at developing synthetically accessible modules with high recognition fidelity, we have focused on the preparation of Te-containing derivatives. Cl, I, and Me groups were chosen as substituents for the 5-position, whereas phenyl, thiophenyl (Th), and CF3 moieties for the 2-position. To describe the different combinations of substituents in the 2- and 5-positions, the molecules are labeled as Y-E-R, where Y stands for the substituent in the 5-position (schematized as an orange sphere, Figure ), E is the chalcogen atom of interest, and R is the moiety in the 2-position (schematized as a green sphere, Figure ), respectively.

In our molecular engineering plan, the n class="Chemical">CGP modules bearing the CF3 moiety in the 2-position and the bulkiest (Me) and electronegative (Cl) groups in the 5-position (e.g., Me-Te-CF and Cl-E-CF) are expected to assemble in a head-to-tail fashion. Similarly, oxazole-bearing Ox-E-CF is expected to arrange head-to-tail in ribbon-like architectures, with the oxazole ring further strengthening the association through weak H-bonding interactions. On the other hand, when a sizable group is added in the 2-position, the formation of wire-like assemblies is expected (e.g., Cl-Te-R and I-Te-Ph). Given that repulsive forces originating from the close proximity of the substituents in the self-assembled structure could arise from either steric or electrostatic contributions, electrostatic surface potential (ESP) maps were computed to further understand the contribution of the electrostatic component (see Supporting Information (SI), Table S1 for the calculated V,max values).

Results and Discussion

Synthesis

The syical">nn class="Chemical">thesis started with the selective bromination of the commercially available amines 1 and 1 using N-bromo succinimide (NBS) in MeCN, which provided compounds 2 and 2, respectively, in good and excellent yields. Brominated amines 2 and 2 were treated with 1 equiv of n-BuLi, followed by the addition of 1 equiv of trialkyl magnesate (freshly prepared by mixing i-PrMgCl with 2 equiv of n-BuLi).[49] Subsequent addition of the relevant freshly grounded elemental chalcogen powder to the reaction mixture led to the corresponding bischalcogenides 3 in significantly improved yields (28–55%) when compared to synthetic protocols previously implemented by our group.[47] The synthesis of derivatives 4 was completed by the reductive cleavage of the dichalcogenide bond using NaBH4 and MeOH in THF, followed by addition of MeI. To insert the CF3 moiety in the 2-position, a one-pot amidation/dehydrative cyclization reaction was performed on 4 using Tf2O in a 1:1 mixture of CH2Cl2 and pyridine, followed by the addition of POCl3 in a 1:1 DIPEA/dioxane solution under refluxing conditions to give X-E-CF. In parallel, Te-bearing amine 4 was converted into amides 5 upon reaction with the relevant acyl chloride which, followed by cyclization in the presence of POCl3 in DIPEA and dioxane, afforded Cl-Te-R in excellent yields. Given the proved chemical compatibility of the CGP moiety with Pd-catalyzed cross-coupling conditions, a Negishi cross-coupling reaction was attemped to prepare Ox-Te-Ph starting from chloro-derivative Cl-Te-Ph.[50] Nevertheless, no conversion was observed.

Thus, we moved our atn class="Chemical">tention to the iodo-bearing congeners as electrophilic substrates. As a result, cyclized products bearing chlorine in the 5-position, i.e., Cl-E-CF and Cl-Te-Ph, were transformed into iodo-containing I-E-CF and I-Te-Ph using NaI in the presence of AcCl in MeCN at 80 °C under microwave irradiation.[51] Finally, reaction between the iodinated derivatives and oxazol-2-ylzinc(II) chloride using [Pd(PPh3)4] in THF at reflux afforded targeted molecules Ox-E-R in good yields (Scheme ). All compounds were fully characterized by 1H, 19F, and 13C NMR spectroscopy, IR, mp, and HR-mass spectrometry (see SI).

Scheme 1

Synthetic Pathway to 2,5-Functionalized CGP Derivatives

Reagents and conditions: (a) NBS, MeCN, r.t., 5 min; (b) 1. n-BuLi, THF, 0 °C, 10 min; 2. i-PrBu2MgLi·LiCl, 0 °C, 1 h; 3. E0, r.t., overnight; 4. Se: K3Fe(CN)6, H2O, r.t., 10 min; Te: NH4Cl, H2O, air, r.t., 2 h; (c) 1. NaBH4, MeOH, THF, r.t., 1 h; 2. MeI, r.t., 1.5 h; (d) 1. (CF3CO)2O, CH2Cl2, pyridine, 0 °C to r.t., overnight; 2. POCl3, DIPEA, 1,4-dioxane, reflux, overnight; (e) acyl chloride, CH2Cl2, pyridine, 0 °C to r.t., overnight; (f) POCl3, DIPEA, 1,4-dioxane, reflux, overnight; (g) AcCl, NaI, MeCN, 80 °C, MW, 12 h; (h) oxazol-2-ylzinc(II) chloride, [Pd(PPh3)4] 10 mol %, THF, reflux, 2 h.

Reagents and conditioical">ns: (a) n class="Chemical">NBS, MeCN, r.t., 5 min; (b) 1. n-BuLi, THF, 0 °C, 10 min; 2. i-PrBu2MgLi·LiCl, 0 °C, 1 h; 3. E0, r.t., overnight; 4. Se: K3Fe(CN)6, H2O, r.t., 10 min; Te: NH4Cl, H2O, air, r.t., 2 h; (c) 1. NaBH4, MeOH, THF, r.t., 1 h; 2. MeI, r.t., 1.5 h; (d) 1. (CF3CO)2O, CH2Cl2, pyridine, 0 °C to r.t., overnight; 2. POCl3, DIPEA, 1,4-dioxane, reflux, overnight; (e) acyl chloride, CH2Cl2, pyridine, 0 °C to r.t., overnight; (f) POCl3, DIPEA, 1,4-dioxane, reflux, overnight; (g) AcCl, NaI, MeCN, 80 °C, MW, 12 h; (h) oxazol-2-ylzinc(II) chloride, [Pd(PPh3)4] 10 mol %, THF, reflux, 2 h.

Solid-State Self-Assembly

The associatioical">n properties of n class="Chemical">the 2,5-functionalized CGP derivatives in the solid state were probed by X-ray analysis of single crystals, generally obtained by slow evaporation of a CHCl3 solution. Governed by fluorophilic domains established by the CF3 moiety in the 2-position, crystals of Me-Te-CF and Cl-E-CF are isomorphs, despite bearing either a Me or Cl atom in the 5-position, either Se or Te atoms. Te-congeners Me-Te-CF (Figure a) and Cl-Te-CF (Figure e) develop in a ribbon-like arrangement, in which each molecule is involved in frontal interactions comprising a chalcogen bond (d = 3.423 and 3.406 Å for Me-Te-CF and Cl-Te-CF, respectively) and a hydrogen bond, with the latter established between the pyridyl H and N atoms (d = 3.420 and 3.385 Å, respectively, for Me-Te-CF and Cl-Te-CF) of two neighboring molecules. Surprisingly, the Se-based congener, Cl-Se-CF, arranges in an analogue ribbon-like orientation (Figure c), though held together only by hydrogen-bonding interactions (d = 3.351 Å). Additional π–π stacking interactions, governing the columnar stacking arrangement in a head-to-tail fashion, are also observed (d = 3.529, 3.464, and 3.484 Å; Figure b,d,f respectively), with the longest distance reported for Me-Te-CF. Considering the ESP map of the two different moieties in the 5-position (i.e., depicting the Me group mostly positive and Cl atom mostly negative), one can easily conjecture that the formation of assembly A for Me-Te-CF is hampered by steric repulsion in the case of CF3 and Me, whereas, in Cl-Te-CF, CF3 and Cl repel each other through a strong electrostatic component.

Figure 2

X-ray structures and their respective ESP maps of (a) Me-Te-CF, (c) Cl-Se-CF, and (e) Cl-Te-CF; π–π stacking arrangements of (b) Me-Te-CF, (d) Cl-Se-CF, and (f) Cl-Te-CF. Space group: P21/m. Crystallization solvent: CHCl3.

X-ray structures and their respective ESP maps of (a) n class="Chemical">Me-Te-CF, (c) Cl-Se-CF, and (e) Cl-Te-CF; π–π stacking arrangements of (b) Me-Te-CF, (d) Cl-Se-CF, and (f) Cl-Te-CF. Space group: P21/m. Crystallization solvent: CHCl3.

Moving to the crystal structure of iodo-derivative n class="Chemical">I-Te-CF, a different molecular packing could be observed. Interestingly, doubly chalcogen-bonded, distorted noncovalent dimers are observed (d = 3.217 Å). Given the low electronegativity and high polarizability of the I atom, the solid-state arrangement suggests the presence of a weaker repulsion between the CF3 and I atoms, compared to that between CF3 and Cl (Figure a). Moreover, each dimer associates through double hydrogen bonds involving the Nc atom (d = 3.486 Å), hence generating a kinked ribbon at the solid state (Figure b). π–π stacking interactions are also observed (d = 3.824 Å with an offset of 2.585 Å), with each column interconnected by multiple halogen bonds (d = 3.482 Å). In this arrangement, each I atom acts simultaneously as both halogen-bonding acceptor and donor (Figure c).

Figure 3

X-ray structures and their ESP maps of (a) I-Te-CF and (d) I-Se-CF; (b) kinked ribbon of I-Te-CF; columnar orientations of (c) I-Te-CF and (e) I-Se-CF (the halogen-bonding and F···F contacts are also displayed). Space groups: C2/c for I-Te-CF, Cmca for I-Se-CF. Crystallization solvent: CHCl3.

X-ray structures and their ESP maps of (a) n class="Chemical">I-Te-CF and (d) I-Se-CF; (b) kinked ribbon of I-Te-CF; columnar orientations of (c) I-Te-CF and (e) I-Se-CF (the halogen-bonding and F···F contacts are also displayed). Space groups: C2/c for I-Te-CF, Cmca for I-Se-CF. Crystallization solvent: CHCl3.

As previously observed for compouical">nd n class="Chemical">Cl-Se-CF, also I-Se-CF crystallizes through the formation of ribbon-like structures with no detectable chalcogen-nitrogen contacts. In these crystals, the monomers organize through hydrogen-bonding interaction (d = 3.418 Å), which are considerably longer than those observed for Cl-Se-CF (Figure d). Notably, I-Se-CF forms columns through π–π stacking interactions (estimated d = 3.489 Å), having the CF3 moieties segregated in fluorinated domains (d = 2.573 and 2.933 Å; Figure e). The functionalization of the 2-position with the thiophenyl unit for Cl-Te-Th and the phenyl ring for Cl-Te-Ph and I-Te-Ph leads to the growth of wire-like supramolecular structures, held together by single EB between the Nc atom and the Te atom of each neighboring molecule. Notably, the asymmetric unit of compound Cl-Te-Th includes two molecules, building a wire-like supramolecular assembly through single EB interactions involving the tellurazole N atom (d = 3.385 Å; Figure a). A similar solid-state organization, as that obtained for Cl-Te-Th, was observed for Cl-Te-Ph. In this case, both Te σ-holes are involved in EB interactions (Figure b). Specifically, the σ-hole(α) engages with the tellurazole Nc atom, developing the wire-like arrangement (d = 3.464 Å; Figure d), whereas the σ-hole(β) bridges the neighboring supramolecular wires through the interaction with the Np atom (d = 3.431 Å). Furthermore, the molecules are held together through π–π stacking interactions in a quasi-parallel fashion (estimated d = 3.460 Å), with halogen–halogen interactions connecting the columnar architectures (d = 3.244 Å; Figure c). In the case of iodo-derivative I-Te-Ph, the asymmetric unit contains two molecules, each interacting with a nearby module through single EB with the Nc atom (d = 3.464 and 3.582 Å). The resulting wire-like organization is further strengthened by weak hydrogen contacts established between the Np atom and one of the H atoms of the phenyl ring (d = 3.237 and 3.321 Å; Figure e). In contrast to chlorinated analogue Cl-Te-Ph, π–π stacking interactions govern the formation of columnar arrangements in a quasi-parallel head-to-tail fashion (estimated d = 3.542 Å), with I···π interactions (σ*-π, d = 3.505 Å) bridging the columns (Figure f).

Figure 4

X-ray structures and their ESP maps of (a) Cl-Te-Th and (b) Cl-Te-Ph, chalcogen bonds are highlighted; wire-like supramolecular architectures of (d) Cl-Te-Ph and (e) I-Te-Ph; stick representation of columnar arrangements of (c) Cl-Te-Ph and (f) I-Te-Ph, with π–π stacking and halogen-bonding interactions highlighted. H atoms are omitted for clarity. Space groups: Pbac for I-Te-Ph, P21/c for Cl-Te-Th and Cl-Te-Ph. Crystallization solvent: CHCl3.

X-ray structures and their ESP maps of (a) n class="Chemical">Cl-Te-Th and (b) Cl-Te-Ph, chalcogen bonds are highlighted; wire-like supramolecular architectures of (d) Cl-Te-Ph and (e) I-Te-Ph; stick representation of columnar arrangements of (c) Cl-Te-Ph and (f) I-Te-Ph, with π–π stacking and halogen-bonding interactions highlighted. H atoms are omitted for clarity. Space groups: Pbac for I-Te-Ph, P21/c for Cl-Te-Th and Cl-Te-Ph. Crystallization solvent: CHCl3.

Building oical">n n class="Chemical">these observations, one can notice that wire-like structures are consistently attained over ribbon and dimeric arrangements with 5-functionalized CGP modules bearing a phenyl moiety in the 2-position. Remarkably, a shortening of the Nc···Te distance can be observed when passing from phenyl-substituted Cl-Te-Ph and I-Te-Ph to Cl-Te-Th.

Aiming at validating the occurren class="Gene">nce of recognition motifs with multiple intermolecular interactions in the solid state, several crystallization attempts for oxazole derivatives Ox-Te-Ph and Ox-E-CF have been performed. However, only the CF3-containing compounds provided single crystals suitable for X-ray diffraction analysis. Notably, Te-congener Ox-Te-CF develops HB/EB ribbons in the solid state. These structures differentiate from those described so far because the O atom of the oxazole and the N atom of the pyridyl moiety both engage in two hydrogen bonds with the H atoms in positions 6 and 7 of a neighboring molecule (d = 3.211 Å and d = 3.423 Å, respectively). A frontal chalcogen bond is also established between the Nc and Te atoms of two adjacent molecules (d = 3.355 Å; Figure a). Considering that the length of this EB is shorter (d = 3.355 Å) than those found in the crystal structures of Me-Te-CF and Cl-Te-CF (d = 3.423 and 3.406 Å, respectively), it is suggested that two HB interactions synergistically strengthen the association between the two molecular modules. Supplementary π–π stacking interactions can be discerned in the molecular packing (d = 3.392 Å; Figure b), with each molecular module arranged in an antiparallel fashion. An analogue supramolecular organization is observed for Se-based congener Ox-Se-CF, having the O atom involved in a hydrogen bond, as well as the Np atom, with the H atoms in 6- and 7-positions of the facing molecular neighbor (d = 3.201 Å, d = 3.418 Å). This governs the arrangement of the synthons in ribbons at the solid state (Figure c). Similarly to Cl-Se-CF and I-Se-CF, no chalcogen bond could be observed for Ox-Se-CF, given that the Se···N distance was longer than the sum of their van der Waals radii (d = 3.514 Å > 3.45 Å). In addition, the crystal packing develops through antiparallel π–π stacking (d = 3.369 Å; Figure d).

Figure 5

X-ray structures and their ESP maps of (a) Ox-Te-CF and (c) Ox-Se-CF; stick representation of the π–π stacking of (b) Ox-Te-CF and (d) Ox-Se-CF. H atoms are omitted for clarity. Space groups: Pnma for Ox-Te-CF, P21/c for Ox-Se-CF. Crystallization solvents: EtOH for Ox-Te-CF, C6H6 for Ox-Se-CF.

X-ray structures and their ESP maps of (a) n class="Chemical">Ox-Te-CF and (c) Ox-Se-CF; stick representation of the π–π stacking of (b) Ox-Te-CF and (d) Ox-Se-CF. H atoms are omitted for clarity. Space groups: Pnma for Ox-Te-CF, P21/c for Ox-Se-CF. Crystallization solvents: EtOH for Ox-Te-CF, C6H6 for Ox-Se-CF.

Conclusions

In this paper, we have expaical">nded n class="Chemical">the recognition space of the CGP moiety in the solid state. By combining the substituents in positions 2 (phenyl, thiophenyl, and CF3 moieties) and 5 (Me group, Cl and I atoms), a large variety of supramolecular assemblies in the solid state could be obtained by modulating the substituents’ steric and electronic properties. Aiming at developing a recognition pattern based on multiple HB and simultaneous single EB interactions, oxazolyl-bearing CGP molecules Ox-Te-CF and Ox-Se-CF have been prepared, with the latter used as reference compound to study the role of the chosen chalcogen atom in the new recognition systems. As expected, the choice of a small moiety as CF3 in the 2-position, combined with Me, Cl, and oxazole substituents in the 5-position, governed the formation of supramolecular head-to-tail HB/EB ribbons. Replacing Cl with an I atom in the 5-position in Te-congener I-Te-CF led to the formation of distorted EB dimers, arranged into a kinked ribbon in the solid state. Furthermore, derivatives bearing sterically demanding phenyl and thiophenyl groups showed the typical wiring organization. These results could open the road toward the engineering of a large variety of materials marked by tunable molecular arrangements, as well as depicting heteromolecular recognition systems involving HB and EB interactions. The encoding of concomitant weak interactions at the solid state could allow the design of multiresponsive materials for applications in optoelectronics and sensing.