Literature DB >> 33441929

Development of an immune-related gene pairs index for the prognosis analysis of metastatic melanoma.

Rong-Zhi Huang1, Min Mao2, Jie Zheng3, Hai-Qi Liang3, Feng-Ling Liu3, Gui-You Zhou3, Yao-Qing Huang1, Fan-Yue Zeng1, Xu Li4.   

Abstract

Melanoma is a skin cancer with great metastatic potential, which is responsible for the major deaths in skin cancer. Although the prognosis of melanoma patients has been improved with the comprehensive treatment, for patients with metastasis, the complexity and heterogeneity of diffuse diseases make prognosis prediction and systematic treatment difficult and ineffective. Therefore, we established a novel personalized immune-related gene pairs index (IRGPI) to predict the prognosis of patients with metastatic melanoma, which was conducive to provide new insights into clinical decision-making and prognostic monitoring for metastatic melanoma. Through complex analysis and filtering, we identified 24 immune-related gene pairs to build the model and obtained the optimal cut-off value from receiver operating characteristic curves, which divided the patients into high and low immune-risk groups. Meantime, the Kaplan-Meier analysis, Cox regression analysis and subgroup analysis showed that IRGPI had excellent prognostic value. Furthermore, IRGPI was shown that was closely associated with immune system in the subsequent tumor microenvironment analysis and gene set enrichment analysis. In addition, we broken through the data processing limitations of traditional researches in different platforms through the application of gene pairs, which would provide great credibility for our model. We believe that our research would provide a new perspective for clinical decision-making and prognostic monitoring in metastatic melanoma.

Entities:  

Year:  2021        PMID: 33441929      PMCID: PMC7806975          DOI: 10.1038/s41598-020-80858-1

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  42 in total

1.  clusterProfiler: an R package for comparing biological themes among gene clusters.

Authors:  Guangchuang Yu; Li-Gen Wang; Yanyan Han; Qing-Yu He
Journal:  OMICS       Date:  2012-03-28

2.  Quantitative Spatial Profiling of PD-1/PD-L1 Interaction and HLA-DR/IDO-1 Predicts Improved Outcomes of Anti-PD-1 Therapies in Metastatic Melanoma.

Authors:  Douglas B Johnson; Jennifer Bordeaux; Ju Young Kim; Christine Vaupel; David L Rimm; Thai H Ho; Richard W Joseph; Adil I Daud; Robert M Conry; Elizabeth M Gaughan; Leonel F Hernandez-Aya; Anastasios Dimou; Pauline Funchain; James Smithy; John S Witte; Svetlana B McKee; Jennifer Ko; John M Wrangle; Bashar Dabbas; Shabnam Tangri; Jelveh Lameh; Jeffrey Hall; Joseph Markowitz; Justin M Balko; Naveen Dakappagari
Journal:  Clin Cancer Res       Date:  2018-07-18       Impact factor: 12.531

Review 3.  Therapy for metastatic melanoma: the past, present, and future.

Authors:  Laura Finn; Svetomir N Markovic; Richard W Joseph
Journal:  BMC Med       Date:  2012-03-02       Impact factor: 8.775

4.  High dose inhalation interleukin-2 therapy for lung metastases in patients with malignant melanoma.

Authors:  A H Enk; D Nashan; A Rübben; J Knop
Journal:  Cancer       Date:  2000-05-01       Impact factor: 6.860

5.  IL-21 initiates an alternative pathway to induce proinflammatory T(H)17 cells.

Authors:  Thomas Korn; Estelle Bettelli; Wenda Gao; Amit Awasthi; Anneli Jäger; Terry B Strom; Mohamed Oukka; Vijay K Kuchroo
Journal:  Nature       Date:  2007-06-20       Impact factor: 49.962

6.  Inferring tumour purity and stromal and immune cell admixture from expression data.

Authors:  Kosuke Yoshihara; Maria Shahmoradgoli; Emmanuel Martínez; Rahulsimham Vegesna; Hoon Kim; Wandaliz Torres-Garcia; Victor Treviño; Hui Shen; Peter W Laird; Douglas A Levine; Scott L Carter; Gad Getz; Katherine Stemke-Hale; Gordon B Mills; Roel G W Verhaak
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

7.  Melanoma: tumor microenvironment and new treatments.

Authors:  Mara Huffenbaecher Giavina-Bianchi; Pedro Francisco Giavina-Bianchi; Cyro Festa
Journal:  An Bras Dermatol       Date:  2017 Mar-Apr       Impact factor: 1.896

8.  PIK3CD induces cell growth and invasion by activating AKT/GSK-3β/β-catenin signaling in colorectal cancer.

Authors:  Jing-Song Chen; Jiong-Qiang Huang; Bing Luo; Shi-Hao Dong; Rong-Chang Wang; Ze-Kun Jiang; Ying-Kang Xie; Wei Yi; Guang-Ming Wen; Jian-Feng Zhong
Journal:  Cancer Sci       Date:  2019-01-29       Impact factor: 6.716

9.  Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1.

Authors:  David A Barbie; Pablo Tamayo; Jesse S Boehm; So Young Kim; Susan E Moody; Ian F Dunn; Anna C Schinzel; Peter Sandy; Etienne Meylan; Claudia Scholl; Stefan Fröhling; Edmond M Chan; Martin L Sos; Kathrin Michel; Craig Mermel; Serena J Silver; Barbara A Weir; Jan H Reiling; Qing Sheng; Piyush B Gupta; Raymond C Wadlow; Hanh Le; Sebastian Hoersch; Ben S Wittner; Sridhar Ramaswamy; David M Livingston; David M Sabatini; Matthew Meyerson; Roman K Thomas; Eric S Lander; Jill P Mesirov; David E Root; D Gary Gilliland; Tyler Jacks; William C Hahn
Journal:  Nature       Date:  2009-10-21       Impact factor: 49.962

Review 10.  The intersection of cancer, cancer stem cells, and the immune system: therapeutic opportunities.

Authors:  Daniel J Silver; Maksim Sinyuk; Michael A Vogelbaum; Manmeet S Ahluwalia; Justin D Lathia
Journal:  Neuro Oncol       Date:  2015-08-11       Impact factor: 13.029

View more
  2 in total

1.  Identification of Lactate-Related Gene Signature for Prediction of Progression and Immunotherapeutic Response in Skin Cutaneous Melanoma.

Authors:  Yalin Xie; Jie Zhang; Mengna Li; Yu Zhang; Qian Li; Yue Zheng; Wei Lai
Journal:  Front Oncol       Date:  2022-02-21       Impact factor: 6.244

2.  Identification and Validation of a Prognostic Immune-Related Gene Signature in Esophageal Squamous Cell Carcinoma.

Authors:  Kai Xiong; Ziyou Tao; Zeyang Zhang; Jianyao Wang; Peng Zhang
Journal:  Front Bioeng Biotechnol       Date:  2022-04-13
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.