Literature DB >> 33441830

Deep learning based prediction of prognosis in nonmetastatic clear cell renal cell carcinoma.

Seok-Soo Byun1, Tak Sung Heo2, Jeong Myeong Choi2, Yeong Seok Jeong3, Yu Seop Kim3, Won Ki Lee4, Chulho Kim5,6.   

Abstract

Survival analyses for malignancies, including renal cell carcinoma (RCC), have primarily been conducted using the Cox proportional hazards (CPH) model. We compared the random survival forest (RSF) and DeepSurv models with the CPH model to predict recurrence-free survival (RFS) and cancer-specific survival (CSS) in non-metastatic clear cell RCC (nm-cRCC) patients. Our cohort included 2139 nm-cRCC patients who underwent curative-intent surgery at six Korean institutions between 2000 and 2014. The data of two largest hospitals' patients were assigned into the training and validation dataset, and the data of the remaining hospitals were assigned into the external validation dataset. The performance of the RSF and DeepSurv models was compared with that of CPH using Harrel's C-index. During the follow-up, recurrence and cancer-specific deaths were recorded in 190 (12.7%) and 108 (7.0%) patients, respectively, in the training-dataset. Harrel's C-indices for RFS in the test-dataset were 0.794, 0.789, and 0.802 for CPH, RSF, and DeepSurv, respectively. Harrel's C-indices for CSS in the test-dataset were 0.831, 0.790, and 0.834 for CPH, RSF, and DeepSurv, respectively. In predicting RFS and CSS in nm-cRCC patients, the performance of DeepSurv was superior to that of CPH and RSF. In no distant time, deep learning-based survival predictions may be useful in RCC patients.

Entities:  

Year:  2021        PMID: 33441830      PMCID: PMC7806580          DOI: 10.1038/s41598-020-80262-9

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  23 in total

1.  Integrative analysis of cross-modal features for the prognosis prediction of clear cell renal cell carcinoma.

Authors:  Zhenyuan Ning; Weihao Pan; Yuting Chen; Qing Xiao; Xinsen Zhang; Jiaxiu Luo; Jian Wang; Yu Zhang
Journal:  Bioinformatics       Date:  2020-05-01       Impact factor: 6.937

2.  Automated Renal Cancer Grading Using Nuclear Pleomorphic Patterns.

Authors:  Daniel Aitor Holdbrook; Malay Singh; Yukti Choudhury; Emarene Mationg Kalaw; Valerie Koh; Hui Shan Tan; Ravindran Kanesvaran; Puay Hoon Tan; John Yuen Shyi Peng; Min-Han Tan; Hwee Kuan Lee
Journal:  JCO Clin Cancer Inform       Date:  2018-12

3.  Graphical methods for assessing violations of the proportional hazards assumption in Cox regression.

Authors:  K R Hess
Journal:  Stat Med       Date:  1995-08-15       Impact factor: 2.373

4.  Evaluating the yield of medical tests.

Authors:  F E Harrell; R M Califf; D B Pryor; K L Lee; R A Rosati
Journal:  JAMA       Date:  1982-05-14       Impact factor: 56.272

5.  A preoperative prognostic model for patients treated with nephrectomy for renal cell carcinoma.

Authors:  Pierre I Karakiewicz; Nazareno Suardi; Umberto Capitanio; Claudio Jeldres; Vincenzo Ficarra; Luca Cindolo; Alexandre de la Taille; Jacques Tostain; Peter F A Mulders; Karim Bensalah; Walter Artibani; Laurent Salomon; Richard Zigeuner; Antoine Valéri; Jean-Luc Descotes; Jean-Jacques Rambeaud; Arnaud Méjean; Francesco Montorsi; Roberto Bertini; Jean-Jacques Patard
Journal:  Eur Urol       Date:  2008-07-25       Impact factor: 20.096

6.  Deep Learning-Based Multi-Omics Integration Robustly Predicts Survival in Liver Cancer.

Authors:  Kumardeep Chaudhary; Olivier B Poirion; Liangqun Lu; Lana X Garmire
Journal:  Clin Cancer Res       Date:  2017-10-05       Impact factor: 12.531

Review 7.  A guide to deep learning in healthcare.

Authors:  Andre Esteva; Alexandre Robicquet; Bharath Ramsundar; Volodymyr Kuleshov; Mark DePristo; Katherine Chou; Claire Cui; Greg Corrado; Sebastian Thrun; Jeff Dean
Journal:  Nat Med       Date:  2019-01-07       Impact factor: 53.440

8.  Risk Prediction Tool for Aggressive Tumors in Clinical T1 Stage Clear Cell Renal Cell Carcinoma Using Molecular Biomarkers.

Authors:  Jee Soo Park; Hyo Jung Lee; Nam Hoon Cho; Jongchan Kim; Won Sik Jang; Ji Eun Heo; Won Sik Ham
Journal:  Comput Struct Biotechnol J       Date:  2019-03-08       Impact factor: 7.271

9.  Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning.

Authors:  Sairam Tabibu; P K Vinod; C V Jawahar
Journal:  Sci Rep       Date:  2019-07-19       Impact factor: 4.379

10.  On the overestimation of random forest's out-of-bag error.

Authors:  Silke Janitza; Roman Hornung
Journal:  PLoS One       Date:  2018-08-06       Impact factor: 3.240

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  7 in total

Review 1.  Precision Medicine: An Optimal Approach to Patient Care in Renal Cell Carcinoma.

Authors:  Revati Sharma; George Kannourakis; Prashanth Prithviraj; Nuzhat Ahmed
Journal:  Front Med (Lausanne)       Date:  2022-06-14

2.  Prediction and Risk Stratification of Cardiovascular Disease in Diabetic Kidney Disease Patients.

Authors:  Jingjing Ren; Dongwei Liu; Guangpu Li; Jiayu Duan; Jiancheng Dong; Zhangsuo Liu
Journal:  Front Cardiovasc Med       Date:  2022-06-24

3.  Deep neural network for the determination of transformed foci in Bhas 42 cell transformation assay.

Authors:  Minami Masumoto; Ittetsu Fukuda; Suguru Furihata; Takahiro Arai; Tatsuto Kageyama; Kiyomi Ohmori; Shinichi Shirakawa; Junji Fukuda
Journal:  Sci Rep       Date:  2021-12-02       Impact factor: 4.379

4.  Deep learning-based histopathological segmentation for whole slide images of colorectal cancer in a compressed domain.

Authors:  Hyeongsub Kim; Hongjoon Yoon; Nishant Thakur; Gyoyeon Hwang; Eun Jung Lee; Chulhong Kim; Yosep Chong
Journal:  Sci Rep       Date:  2021-11-18       Impact factor: 4.379

5.  Predicting completion of clinical trials in pregnant women: Cox proportional hazard and neural network models.

Authors:  Bomee Kim; Yun Ji Jang; Hae Ram Cho; So Yeon Kim; Ji Eun Jeong; Mi Kyoung Shim; Myeong Gyu Kim
Journal:  Clin Transl Sci       Date:  2021-11-17       Impact factor: 4.689

6.  An energy-efficient in-memory computing architecture for survival data analysis based on resistive switching memories.

Authors:  Andrea Baroni; Artem Glukhov; Eduardo Pérez; Christian Wenger; Enrico Calore; Sebastiano Fabio Schifano; Piero Olivo; Daniele Ielmini; Cristian Zambelli
Journal:  Front Neurosci       Date:  2022-08-09       Impact factor: 5.152

7.  AI-Driven Image Analysis in Central Nervous System Tumors-Traditional Machine Learning, Deep Learning and Hybrid Models.

Authors:  A V Krauze; Y Zhuge; R Zhao; E Tasci; K Camphausen
Journal:  J Biotechnol Biomed       Date:  2022-01-10
  7 in total

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