Literature DB >> 33441647

Comprehensive characterisation of Culicoides clastrieri and C. festivipennis (Diptera: Ceratopogonidae) according to morphological and morphometric characters using a multivariate approach and DNA barcode.

Leila Hadj-Henni1, Zoubir Djerada2, Christine Millot1, Denis Augot3.   

Abstract

Biting midges are widespread around the world and play an essential role in the epidemiology of over 100 veterinary and medical diseases. For taxonomists, it is difficult to correctly identify species because of affinities among cryptic species and species complexes. In this study, species boundaries were examined for C. clastrieri and C. festivipennis and compared with six other Culicoides species. The classifiers are partial least squares discriminant analysis (PLS-DA) and sparse partial least squares discriminant analysis (sPLS-DA).The performance of the proposed method was evaluated using four models: (i) geometric morphometrics applied to wings; (ii) morphological wing characters, (iii) "Full wing" (landmarks and morphological characters) and (iv)  "Full model" (morphological characters-wing, head, abdomen, legs-and wing landmarks). Double cross-validation procedures were used to validate the predictive ability of PLS-DA and sPLS-DA models. The AUC (area under the ROC curve) and the balanced error rate showed that the sPLS-DA model performs better than the PLS-DA model. Our final sPLS-DA analysis on the full wing and full model, with nine and seven components respectively, managed to perfectly classify our specimens. The C. clastrieri and C. festivipennis sequences, containing both COI and 28S genes, revealed our markers' weak discrimination power, with an intraspecific and interspecific divergence of 0.4% and 0.1% respectively. Moreover, C. clastrieri and C. festivipennis are grouped in the same clade. The morphology and wing patterns of C. clastrieri and C. festivipennis can be used to clearly distinguish them. Our study confirms C. clastrieri and C. festivipennis as two distinct species. Our results show that caution should be applied when relying solely on DNA barcodes for species identification or discovery.

Entities:  

Year:  2021        PMID: 33441647      PMCID: PMC7806617          DOI: 10.1038/s41598-020-78053-3

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  33 in total

1.  Taxonomic assessment of Culicoides brunnicans, C. santonicus and C. vexans (Diptera: Ceratopogonidae) in France: Implications in systematics.

Authors:  L Hadj-Henni; T De Meulemeester; B Mathieu; J Depaquit; D Augot
Journal:  Infect Genet Evol       Date:  2015-05-22       Impact factor: 3.342

2.  Geometric morphometrics of the wing in the subgenus Culicoides (Diptera: Ceratopogonidae): from practical implications to evolutionary interpretations.

Authors:  F Muñoz-Muñoz; S Talavera; N Pagès
Journal:  J Med Entomol       Date:  2011-03       Impact factor: 2.278

Review 3.  Geometric morphometrics in mosquitoes: What has been measured?

Authors:  Camila Lorenz; Fabio Almeida; Fernanda Almeida-Lopes; Caroline Louise; Stella N Pereira; Vivian Petersen; Paloma O Vidal; Flávia Virginio; Lincoln Suesdek
Journal:  Infect Genet Evol       Date:  2017-06-30       Impact factor: 3.342

4.  Economic assessment of an emerging disease: the case of Schmallenberg virus in France.

Authors:  A Waret-Szkuta; P Alarcon; B Hasler; J Rushton; F Corbière; D Raboisson
Journal:  Rev Sci Tech       Date:  2017-04       Impact factor: 1.181

5.  Description of Culicoides pseudoheliconiae sp.n. from Peruvian Amazon and revalidation of Culicoides contubernalis Ortiz & Leon (Diptera: Ceratopogonidae).

Authors:  Maria Luiza Felippe-Bauer; Abraham G Cáceres; Cristiane S Silva; William Valderrama-Bazan; Antero Gonzales-Perez; Janira M Costa
Journal:  Mem Inst Oswaldo Cruz       Date:  2008-04-30       Impact factor: 2.743

6.  Wing geometry as a tool for discrimination of Obsoletus group (Diptera: Ceratopogonidae: Culicoides) in France.

Authors:  L Hajd Henni; F Sauvage; C Ninio; J Depaquit; D Augot
Journal:  Infect Genet Evol       Date:  2013-10-26       Impact factor: 3.342

7.  Is the morphology of Culicoides intersexes parasitized by mermithid nematodes a parasite adaptation? A morphometric approach to Culicoides circumscriptus (Diptera: Ceratopogonidae).

Authors:  Francesc Muñoz-Muñoz; Josep Ramoneda; Nonito Pagès; Nuria Pujol; Sandra Talavera
Journal:  J Invertebr Pathol       Date:  2016-01-22       Impact factor: 2.841

8.  Phenotypic differentiation and phylogenetic signal of wing shape in western European biting midges, Culicoides spp., of the subgenus Avaritia.

Authors:  F Muñoz-Muñoz; S Talavera; S Carpenter; S A Nielsen; D Werner; N Pagès
Journal:  Med Vet Entomol       Date:  2014-01-06       Impact factor: 2.739

9.  Delineation of Culicoides species by morphology and barcode exemplified by three new species of the subgenus Culicoides (Diptera: Ceratopogonidae) from Scandinavia.

Authors:  Soren Achim Nielsen; Michael Kristensen
Journal:  Parasit Vectors       Date:  2015-03-10       Impact factor: 3.876

10.  Evaluation of Classifier Performance for Multiclass Phenotype Discrimination in Untargeted Metabolomics.

Authors:  Patrick J Trainor; Andrew P DeFilippis; Shesh N Rai
Journal:  Metabolites       Date:  2017-06-21
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  2 in total

1.  Unveiling the Pathogenic Bacteria Causing Descending Necrotizing Mediastinitis.

Authors:  Qiang Sun; Zixuan Li; Panpan Wang; Junfang Zhao; Shuai Chen; Minglei Sun
Journal:  Front Cell Infect Microbiol       Date:  2022-06-08       Impact factor: 6.073

2.  Culicoides species community composition and feeding preferences in two aquatic ecosystems in northern Spain.

Authors:  Mikel A González; Fátima Goiri; Sean W J Prosser; Aitor Cevidanes; Luis M Hernández-Triana; Jesús F Barandika; Paul D N Hebert; Ana L García-Pérez
Journal:  Parasit Vectors       Date:  2022-06-11       Impact factor: 4.047

  2 in total

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