Literature DB >> 33439153

A fully automated crystallization apparatus for small protein quantities.

Ryuichi Kato1, Masahiko Hiraki2, Yusuke Yamada1, Mikio Tanabe1, Toshiya Senda1.   

Abstract

In 2003, a fully automated protein crystallization and monitoring system (PXS) was developed to support the structural genomics projects that were initiated in the early 2000s. In PXS, crystallization plates were automatically set up using the vapor-diffusion method, transferred to incubators and automatically observed according to a pre-set schedule. The captured images of each crystallization drop could be monitored through the internet using a web browser. While the screening throughput of PXS was very high, the demands of users have gradually changed over the ensuing years. To study difficult proteins, it has become important to screen crystallization conditions using small amounts of proteins. Moreover, membrane proteins have become one of the main targets for X-ray crystallography. Therefore, to meet the evolving demands of users, PXS was upgraded to PXS2. In PXS2, the minimum volume of the dispenser is reduced to 0.1 µl to minimize the amount of sample, and the resolution of the captured images is increased to five million pixels in order to observe small crystallization drops in detail. In addition to the 20°C incubators, a 4°C incubator was installed in PXS2 because crystallization results may vary with temperature. To support membrane-protein crystallization, PXS2 includes a procedure for the bicelle method. In addition, the system supports a lipidic cubic phase (LCP) method that uses a film sandwich plate and that was specifically designed for PXS2. These improvements expand the applicability of PXS2, reducing the bottleneck of X-ray protein crystallography. open access.

Entities:  

Keywords:  automation; crystallization; high-throughput; membrane proteins

Year:  2021        PMID: 33439153     DOI: 10.1107/S2053230X20015514

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  3 in total

1.  FAD-dependent C-glycoside-metabolizing enzymes in microorganisms: Screening, characterization, and crystal structure analysis.

Authors:  Takuto Kumano; Sanae Hori; Satomi Watanabe; Yuzu Terashita; Hong Yang Yu; Yoshiteru Hashimoto; Toshiya Senda; Miki Senda; Michihiko Kobayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-05       Impact factor: 11.205

2.  Characterization of a novel type of carbonic anhydrase that acts without metal cofactors.

Authors:  Yoshihisa Hirakawa; Miki Senda; Kodai Fukuda; Hong Yang Yu; Masaki Ishida; Masafumi Taira; Kazushi Kinbara; Toshiya Senda
Journal:  BMC Biol       Date:  2021-05-18       Impact factor: 7.431

3.  C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.

Authors:  Takahiro Mori; Takuto Kumano; Haibing He; Satomi Watanabe; Miki Senda; Toshio Moriya; Naruhiko Adachi; Sanae Hori; Yuzu Terashita; Masato Kawasaki; Yoshiteru Hashimoto; Takayoshi Awakawa; Toshiya Senda; Ikuro Abe; Michihiko Kobayashi
Journal:  Nat Commun       Date:  2021-11-02       Impact factor: 14.919

  3 in total

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