| Literature DB >> 33437182 |
Krystyna Obtulowicz1, Teofila KsiĄŻek2, Anna Bogdali1, Wojciech Dyga1, Ewa Czarnobilska1, Aldona Juchacz3.
Abstract
Hereditary angioedema due to C1-inhibitor deficiency (C1-INH-HAE) type I and II is a rare and life-threatening disease caused by SERPING1 gene mutations. Previous genetic studies indicated a wide spectrum of disease-associated variants in the SERPING1 gene and often lack of correlation with patient's phenotypes. The aim of this study was to evaluate the presence, type, and localization of mutations in the SERPING1 gene in 41 Polish patients with C1-INH-HAE and their relation with case/family history, type of C1-INH-HAE, fC1-INH, age of onset, and disease severity. Sanger sequencing and MLPA method were used for detection of disease-associated variants. In 34 (82.9%) patients, mutations located in various regions of SERPING1 gene were revealed. The detected alterations in patients with C1-INH-HAE type I differed and were positioned in various exons/introns of the SERPING1 gene. The most frequent disease-associated variants appeared in exon 3 (especially in type I) and in exon 8 (type I and II). Out of 20 different disease-causing variants, 9 were not previously described. We did not find any relation between the type and location of the mutations and no type of features included in phenotype evaluation of the patients, such as case and family history, type of C1-INH-HAE, age of onset, biochemical parameters, or severity of disease.Entities:
Keywords: C1-inhibitor; SERPING1; disease-associated variants; hereditary angioedema
Year: 2020 PMID: 33437182 PMCID: PMC7790005 DOI: 10.5114/ceji.2020.101252
Source DB: PubMed Journal: Cent Eur J Immunol ISSN: 1426-3912 Impact factor: 2.085
Primers used for Sanger sequencing analysis of coding region of SERPING1 gene (reference sequence No. ENST00000278407.8)
| Exon | Primers | Length of PCR product | Annealing temperature |
|---|---|---|---|
| 1. ENSE00001941568 | F: 5’-CAC CTA CCA GGG GAT TTG G-3’ | 319 bp | 58°C |
| 2. ENSE00002142743 | F: 5’-TGG GGA AAA CAA AAC AGA GG-3’ | 346 bp | 56°C |
| 3. ENSE00003463488 | F: 5’-CCA CAC CTT CTC TTC CTG CT-3’ | 668 bp | 59°C |
| 4. ENSE00003528440 | F: 5’-CTC CAT TCC AGC CTG GTC-3’ | 328 bp | 58°C |
| 5. ENSE00003567744 | F: 5’-GCA TGC TCA CTC TCA AAT CG-3’ | 361 bp | 56°C |
| 6. ENSE00003499999 | F: 5’-GGA TCT CAA TGT CCC TGC AC-3’ | 330 bp | 58°C |
| 7. ENSE00003682693 | F: 5’-GCA GGA CAG CAT TGT GAC AG-3’ | 419 bp | 58°C |
| 8. ENSE00001769777 | F: 5’-ATG TAA TCT GGC AAA CAA GGG AAG-3’ | 679 bp | 59°C |
Disease-associated variants identified by Sanger sequencing genotyping and MLPA analysis in Polish patients with C1-INH-HAE
| No. family | No. | Sex | Age | C1-INH- | Disease-associated varianta | ||||
|---|---|---|---|---|---|---|---|---|---|
| A. Sanger sequencing | |||||||||
| cDNA change | Protein change | Location | Mutation type | HGMD_MUTATIONb | |||||
| I | 1 | F | 59 | I | c.1249+5G>A | ? | intron 7 | Splice region variant | CS083985 |
| 2 | F | 30 | I | c.1249+5G>A | ? | intron 7 | Splice region variant | ||
| II | 3 | F | 56 | I | c.177_177delC | p.(L60Wfs*19) | exon 3 | Deletion variant, frameshift variant | Novelc |
| 4 | M | 36 | I | c.177_177delC | p.(L60Wfs*19) | exon 3 | Deletion variant, frameshift variant | ||
| 5 | F | 31 | I | c.177_177delC | p.(L60Wfs*19) | exon 3 | Deletion variant, frameshift variant | ||
| III | 6 | M | 37 | I | c.667C>T | p.(Gln223Ter) | exon 4 | Nonsense variant | CM033456 |
| IV | 7 | F | 23 | II | c.1396C>T | p.(Arg466Cys) | exon 8 | Missense variant | CM890026 |
| 8 | F | 29 | II | c.1396C>T | p.(Arg466Cys) | exon 8 | Missense variant | ||
| VI | 10 | F | 69 | I | c.1328A>C | p.(His443Pro) | exon 8 | Missense variant | CM004572 |
| VIII | 15 | M | 53 | II | c.1396C>T | p.(Arg466Cys) | exon 8 | Missense variant | CM890026 |
| 16 | F | 30 | II | c.1396C>T | p.(Arg466Cys) | exon 8 | Missense variant | ||
| IX | 17 | F | 38 | II | c.1397G>T | p.(Arg466Leu) | exon 8 | Missense variant | CM92013 |
| X | 18 | F | 22 | I | c.463C>G | p.(His155Asp) | exon 3 | Missense variant | Novelc |
| XI | 19 | F | 35 | I | c.540_541insAG | p.(Val181Argfs*31) | exon 3 | Insertion variant, frameshift variant | Novelc |
| XII | 20 | F | 52 | I | c.485_498delinsTGCTGAGA | p.(Lys162_Asn166delinsMetLeuArg | exon 3 | Deletion-insertion variant | Novelc |
| 21 | F | 55 | I | c.485_498delinsTGCTGAGA | p.(Lys162_Asn166delinsMetLeuArg | exon 3 | Deletion-insertion variant | ||
| XVI | 25 | M | 58 | I | c.-22-19_-22-4delAGGCTGGCTGGCTCCG | None | intron 1 | Splice region variant | Novelc |
| XIX | 28 | F | 47 | II | c.1396C>T | p.(Arg466Cys) | exon 8 | Missense variant | CM890026 associated with type II |
| XX | 29 | M | 44 | I | c.467C>A | p.(Ala156Asp) | exon 3 | Missense variant | CM087069 |
| XXII | 32 | F | 75 | I | c.733dupA | p.(Ser245Lysfs*12) | exon 5 | Duplication variant, frameshift variant | Novelc |
| XXIII | 33 | F | 51 | I | c.990C>G | p.(Tyr330Ter) | exon 6 | Nonsense variant | CM960221 |
| XXIV | 34 | F | 41 | I | c.622C>T | p.(Gln208Ter) | exon 4 | Nonsense variant | Novelc |
| XXV | 35 | M | 37 | I | c.1322T>C | p.(Met441Thr) | exon 8 | Missense variant | CM087089 |
| XXVI | 36 | F | 33 | II | c.1396C>A | p.(Arg466Ser) | exon 8 | Missense variant | CM900041 |
| XXVIII | 38 | F | 43 | I | c.550G>A | p.(Gly184Arg) | exon 3 | Missense variant | BM1165483 |
| XXIX | 39 | M | 41 | I | c.79dupA | p.(Thr27Asnfs*31) | exon 3 | Duplication variant, frameshift variant | Novelc |
| XXX | 40 | F | 29 | I | c.553_554insG | p.(Ala185Glyfs*72) | exon 4 | Insertion variant, frameshift variant | Novelc |
| XXXI | 41 | F | 40 | I | c.152C>T | p.(Ser51Phe) | exon 3 | Missense variant | rs773505671 |
| B. MLPA analysis | |||||||||
| Change described at genomic DNA | Protein change | Location | Mutation type | ||||||
| VII | 11 | F | 61 | I | rsSERPING1-5(P243-SERPING1 - F12)x3 | ? | exon 5 and 6 | Gross duplication | |
| 12 | F | 33 | I | rsSERPING1-5(P243-SERPING1 - F12)x3 | ? | exon 5 and 6 | Gross duplication | ||
| 13 | M | 4 | I | rsSERPING1-5(P243-SERPING1 - F12)x3 | ? | exon 5 and 6 | Gross duplication | ||
| 14 | F | 29 | I | rsSERPING1-5(P243-SERPING1 - F12)x3 | ? | exon 5 and 6 | Gross duplication | ||
| XXI | 30 | F | 58 | I | rsSERPING1-8(P243-SERPING1 - F12)x1 | ? | exon 8 | Gross deletions | |
| 31 | F | 26 | I | rsSERPING1-8(P243-SERPING1 - F12)x1 | ? | exon 8 | Gross deletions | ||
| Total | 26 F | I – 27 | |||||||
F – female, M – male, a all disease-associated variants were present in the heterozygous state, β HGMD – the Human Gene Mutation Database, c novel disease-associated variant, not previously described, d uncertain significance, variant probably leading to C1-INH-HAE, confirmation of functional analysis required
Clinical characteristic 7 of 41 (17.1%) patients without confirmation of disease-associated variants by Sanger sequencing genotyping and MLPA analysis
| No. family | No. of case | Sex | Age | aC1- | fC1- | aC4 | C1-INH-HAE type | Family history | Score | Age of onset/ | Detected |
|---|---|---|---|---|---|---|---|---|---|---|---|
| V | 9 | F | 23 | 0.06 | 19.4 | 0.04 | I | Yes | 3 | 4/abdomen | exon 8: rs4926. c.1438G>A (p.Val480Met) in heterozygous state |
| XIII | 22 | M | 67 | 0.08 | 47 | 0.12 | I | No | 1 | 20/foot | exon 8: rs4926. c.1438G>A (p.Val480Met) in heterozygous state |
| XIV | 23 | F | 49 | 0.048 | 13.6 | 0.11 | I | Yes | 2 | 15/abdomen | exon 8: rs4926. c.1438G>A (p.Val480Met) in heterozygous state |
| XV | 24 | F | 53 | 0.048 | 23 | 0.07 | I | No | 2 | 5/abdomen | exon 8: rs4926. c.1438G>A (p.Val480Met) in heterozygous state |
| XII | 26 | F | 47 | 0.1 | 46 | 0.07 | I | Yes | 2 | 24/abdomen | exon 8: rs4926. c.1438G>A (p.Val480Met) in heterozygous state |
| XVIII | 27 | F | 34 | 0.02 | 30.4 | 0.03 | I | Yes | 3 | 10/abdomen | exon 8: rs4926. c.1438G>A (p.Val480Met) in heterozygous state |
| XXVII | 37 | M | 75 | 0.05 | 10 | 0.03 | I | No | 2 | 62/face | exon 8: rs4926. c.1438G>A (p.Val480Met) in heterozygous state |
| Total | 6 F | 0.6 | 27.3 | 0.1 | Yes – 4 | 0-3 | 4-62 |
aC1-INH – serum level of C1-INH (normal range, 0.2-0.39 g/l), fC1-INH – activity of C1-INH in plasma (normal range, 70-130%), aC4 – serum level of C4 (normal range, 0.1-0.4 g/l)