Literature DB >> 35553639

Droplet digital PCR for identifying copy number variations in patients with primary immunodeficiency disorders.

See-Tarn Woon1,2, Julia Mayes1, Alexander Quach3, Hilary Longhurst4,5, Antonio Ferrante3, Rohan Ameratunga1,2,4.   

Abstract

Primary immunodeficiency disorders comprise a rare group of mostly monogenic disorders caused by inborn errors of immunity. The majority can be identified by either Sanger sequencing or next generation sequencing. Some disorders result from large insertions or deletions leading to copy number variations (CNVs). Sanger sequencing may not identify these mutations. Here we present droplet digital PCR as an alternative cost-effective diagnostic method to identify CNV in these genes. The data from patients with large deletions of NFKB1, SERPING1, and SH2D1A are presented.
© The Author(s) 2021. Published by Oxford University Press on behalf of the British Society for Immunology. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  CNV; HAE; MLPA; XLP; ddPCR; primary immunodeficiency disorders

Mesh:

Year:  2022        PMID: 35553639      PMCID: PMC9113119          DOI: 10.1093/cei/uxab034

Source DB:  PubMed          Journal:  Clin Exp Immunol        ISSN: 0009-9104            Impact factor:   4.330


  27 in total

1.  Multiplexed target detection using DNA-binding dye chemistry in droplet digital PCR.

Authors:  Geoffrey P McDermott; Duc Do; Claudia M Litterst; Dianna Maar; Christopher M Hindson; Erin R Steenblock; Tina C Legler; Yann Jouvenot; Samuel H Marrs; Adam Bemis; Pallavi Shah; Josephine Wong; Shenglong Wang; David Sally; Leanne Javier; Theresa Dinio; Chunxiao Han; Timothy P Brackbill; Shawn P Hodges; Yunfeng Ling; Niels Klitgord; George J Carman; Jennifer R Berman; Ryan T Koehler; Amy L Hiddessen; Pramod Walse; Luc Bousse; Svilen Tzonev; Eli Hefner; Benjamin J Hindson; Thomas H Cauly; Keith Hamby; Viresh P Patel; John F Regan; Paul W Wyatt; George A Karlin-Neumann; David P Stumbo; Adam J Lowe
Journal:  Anal Chem       Date:  2013-11-19       Impact factor: 6.986

2.  Autoimmune and inflammatory manifestations occur frequently in patients with primary immunodeficiencies.

Authors:  Alain Fischer; Johan Provot; Jean-Philippe Jais; Alexandre Alcais; Nizar Mahlaoui
Journal:  J Allergy Clin Immunol       Date:  2017-02-10       Impact factor: 10.793

3.  SERPING1 mutations in 59 families with hereditary angioedema.

Authors:  Alberto López-Lera; Sofía Garrido; Olga Roche; Margarita López-Trascasa
Journal:  Mol Immunol       Date:  2011-08-23       Impact factor: 4.407

4.  The European Society for Immunodeficiencies (ESID) Registry Working Definitions for the Clinical Diagnosis of Inborn Errors of Immunity.

Authors:  Markus G Seidel; Gerhard Kindle; Benjamin Gathmann; Isabella Quinti; Matthew Buckland; Joris van Montfrans; Raphael Scheible; Stephan Rusch; Lukas M Gasteiger; Bodo Grimbacher; Nizar Mahlaoui; Stephan Ehl
Journal:  J Allergy Clin Immunol Pract       Date:  2019-02-15

Review 5.  Review: Diagnosing Common Variable Immunodeficiency Disorder in the Era of Genome Sequencing.

Authors:  Rohan Ameratunga; Klaus Lehnert; See-Tarn Woon; David Gillis; Vanessa L Bryant; Charlotte A Slade; Richard Steele
Journal:  Clin Rev Allergy Immunol       Date:  2018-04       Impact factor: 8.667

6.  Targeted next-generation sequencing for the molecular diagnosis of hereditary angioedema due to C1-inhibitor deficiency.

Authors:  Gedeon Loules; Maria Zamanakou; Faidra Parsopoulou; Sofia Vatsiou; Fotis Psarros; Dorottya Csuka; Grzegorz Porebski; Krystyna Obtulowicz; Anna Valerieva; Maria Staevska; Alberto López-Lera; Margarita López-Trascasa; Dumitru Moldovan; Markus Magerl; Marcus Maurer; Matthaios Speletas; Henriette Farkas; Anastasios E Germenis
Journal:  Gene       Date:  2018-05-16       Impact factor: 3.688

Review 7.  Perspective: Application of the American College of Medical Genetics Variant Interpretation Criteria to Common Variable Immunodeficiency Disorders.

Authors:  Rohan Ameratunga; Caroline Allan; Klaus Lehnert; See-Tarn Woon
Journal:  Clin Rev Allergy Immunol       Date:  2021-04-05       Impact factor: 8.667

Review 8.  Human inborn errors of immunity: An expanding universe.

Authors:  Luigi D Notarangelo; Rosa Bacchetta; Jean-Laurent Casanova; Helen C Su
Journal:  Sci Immunol       Date:  2020-07-10

9.  Loss-of-function nuclear factor κB subunit 1 (NFKB1) variants are the most common monogenic cause of common variable immunodeficiency in Europeans.

Authors:  Paul Tuijnenburg; Hana Lango Allen; Siobhan O Burns; Daniel Greene; Machiel H Jansen; Emily Staples; Jonathan Stephens; Keren J Carss; Daniele Biasci; Helen Baxendale; Moira Thomas; Anita Chandra; Sorena Kiani-Alikhan; Hilary J Longhurst; Suranjith L Seneviratne; Eric Oksenhendler; Ilenia Simeoni; Godelieve J de Bree; Anton T J Tool; Ester M M van Leeuwen; Eduard H T M Ebberink; Alexander B Meijer; Salih Tuna; Deborah Whitehorn; Matthew Brown; Ernest Turro; Adrian J Thrasher; Kenneth G C Smith; James E Thaventhiran; Taco W Kuijpers
Journal:  J Allergy Clin Immunol       Date:  2018-03-02       Impact factor: 10.793

10.  Rapid Low-Cost Microarray-Based Genotyping for Genetic Screening in Primary Immunodeficiency.

Authors:  Narissara Suratannon; Rogier T A van Wijck; Linda Broer; Laixi Xue; Joyce B J van Meurs; Barbara H Barendregt; Mirjam van der Burg; Willem A Dik; Pantipa Chatchatee; Anton W Langerak; Sigrid M A Swagemakers; Jacqueline A C Goos; Irene M J Mathijssen; Virgil A S H Dalm; Kanya Suphapeetiporn; Kim C Heezen; Jose Drabwell; André G Uitterlinden; Peter J van der Spek; P Martin van Hagen
Journal:  Front Immunol       Date:  2020-04-15       Impact factor: 7.561

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