| Literature DB >> 33437180 |
Dawid Szpecht1, Anna Chmielarz-CzarnociŃska2, Janusz Gadzinowski1, Agnieszka Seremak-Mrozikiewicz3, GraŻyna KurzawiŃska3, Marta Szymankiewicz1, Krzysztof Drews3, Anna Gotz-WiĘckowska2.
Abstract
INTRODUCTION: A growing body of evidence shows that genetics plays a vital role in the development and progression of retinopathy of prematurity (ROP). Perinatal inflammation is also considered an important risk factor of ROP. Therefore, understanding the interplay of genetics and susceptibility to inflammation might shed light on the pathogenesis of ROP and make its screening and treatment more effective in preventing visual impairment in premature infants.Entities:
Keywords: inflammation; laser photocoagulation; polymorphism; ranibizumab injection; retinopathy of prematurity (ROP)
Year: 2020 PMID: 33437180 PMCID: PMC7790002 DOI: 10.5114/ceji.2020.94789
Source DB: PubMed Journal: Cent Eur J Immunol ISSN: 1426-3912 Impact factor: 2.085
Description of the five studied polymorphisms in IL-1, IL-6, IL-1RN, and TNF-α genes
| Gene symbol | Polymorphism | Sequence of primers | Restriction enzyme | Products |
|---|---|---|---|---|
| IL-1β (rs1143634) | +3953C>T | F 5`-gTT gTC ATC Aga CTT TgA CC-3` | TaqI | CC137,114 bp |
| IL-1RN (rs2234663) | VNTR 86 bp | F 5`-CTC AgC AAC ACT CCT AT-3` | IL1RN*0 154 bp | |
| IL-6 | -174G>C | F 5`-ACA TgC CAA gTg CTg AgT CA-3` | LweI | GG114,100 bp |
| IL-6 | -596G>A | F 5`-ggA gTC ACA CAC TCC ACC Tg-3` | BseGI(BtsCI) | GG420 bp GA420,354,66 bp |
| TNF-α (rs1800629) | -308G>A | 5`-AAA Tgg Agg CAA Tag gTT TTg Agg ggC TTg | FaqI (BsmFI) | GG86,45 bp |
Demographic and clinical characteristic of enrolled infants
| Characteristic | No ROP | ROP | Non-treatment-requiring ROP | Treatment-requiring ROP | |||
|---|---|---|---|---|---|---|---|
| Female, | 25 (49.0) | 19 (48.7) | 0.977a | 12 (48.0) | 7 (50.0) | 0.831c | |
| Gestational age (weeks) | < 0.0001a | 0.218e | |||||
| median and range | 30 (26-33) | 26 (22-31) | 27 (23-31) | 25 (22-30) | |||
| 24-28 ( | 14 (27.5) | 31 (79.5) | 18 (72.0) | 13 (92.8) | |||
| 29-32 ( | 37 (72.5) | 8 (20.5) | 7 (28.0) | 1 (7.0) | |||
| Birth weight (gram) | < 0.0001b | 0.077a | |||||
| median and range | 1345 (790-2340) | 860 (510-1500) | 930 (610-1500) | 810 (510-1300) | |||
| < 750 | 0 (0.0) | 9 (23.1) | 3 (12.0) | 6 (42.8) | |||
| 750-1000 | 9 (17.6) | 16 (41.0) | 11 (44.0) | 5 (35.7) | |||
| > 1000 | 42 (82.3) | 14 (35.9) | 11 (44.0) | 3 (21.4) | |||
| Apgar score (median and range) | |||||||
| 1st minute | 6 (1-10) | 4 (1-9) | 0.0001d | 5 (1-9) | 4 (1-6) | 0.656d | |
| 5th minute | 8 (5-10) | 7 (1-9) | 0.0002d | 7 (1-9) | 7 (4-9) | 0.226d | |
| Mode of delivery, | 0.578a | 1.000e | |||||
| Vaginal | 18 (35.3) | 16 (41.0) | 10 (40.0) | 6 (42.8) | |||
| Caesarean section | 33 (64.7) | 23 (59.0) | 15 (60.0) | 8 (57.1) | |||
| Mechanical ventilation (days) median and range | 8 (1-53) | 54 (3-146) | < 0.0001d | 44 (3-101) | 80 (3-146) | 0.005d | |
| Asphyxia ( | 3 (5.9) | 5 (12.8) | 0.440c | 2 (8.0) | 3 (21.4) | 0.329e | |
| Intrauterine infection ( | 24 (47.0) | 22 (56.4) | 0.379a | 14 (56.0) | 8 (57.1) | 0.789c | |
| Late-onset infection ( | 6 (11.7) | 6 (15.4) | 0.851b | 4 (16.0) | 2 (14.3) | 1.000e | |
| IVH ( | 11 (21.6) | 23 (59.0) | 0.0003a | 11 (44.0) | 12 (85.7) | 0.028c | |
| BPD ( | 6 (11.7) | 20 (51.3) | < 0.0001a | 11 (44.0) | 9 (64.3) | 0.378c | |
| NEC ( | 8 (15.7) | 9 (23.1) | 0.538c | 4 (16.0) | 5 (35.7) | 0.238e | |
χ2 test, β Fisher Freeman Halton test, c χ2 test with Yate’s correction, d Mann-Whitney test, e Fisher exact test, IVH – intraventricular haemorrhage, BPD – bronchopulmonary dysplasia, NEC – necrotising enterocolitis
Genotype distribution of studied polymorphisms and the analysis for Hardy-Weinberg equilibrium in infants without and with retinopathy of prematurity (ROP), and without and with ROP treatment
| Gene | Genotypes | No ROP | ROP | OR 95% CI | Non-treatment-requiring ROP | Treatment-requiring ROP | OR 95% CI | |||
|---|---|---|---|---|---|---|---|---|---|---|
| IL-1β | CC | 30 (28.3) | 23 (23.1) | 0.721a | Reference | 12 (12.3) | 11 (11.2) | 0.225b | Reference | |
| CT | 16 (19.4) | 14 (13.8) | 1.141 | 11 (10.5 ) | 3 (2.7) | 0.298 | ||||
| TT | 5 (3.3) | 2 (2.1) | 0.522 | 2 (2.3) | 0 (0.2) | 0.000 | ||||
| HWE p | 0.214 | 0.945 | 0.812 | 0.653 | ||||||
| Allele C | 76 | 60 | 0.709a | Reference | 35 | 25 | 0.097c | Reference | ||
| Allele T | 26 | 18 | 0.877 | 15 | 3 | 0.280 | ||||
| IL-1RN | 1/1 | 24 (22.7) | 22 (20.1) | 0.689b | Reference | 16 (16) | 6 (4.6) | 0.086b | Reference | |
| 1/2 | 18 (20.6) | 12 (15.8) | 0.727 | 8 (8) | 4 (6.9) | 1.333 | ||||
| 1/3 | 2 | 0 | 0.000 | 0 | 0 | – | ||||
| 2/2 | 6 (4.7) | 5 (3.1) | 1.309 | 1 (1) | 4 (2.6) | 10.67 | ||||
| 2/3 | 1 | 0 | 0.000 | 0 | 0 | – | ||||
| HWE p | 0.378 | 0.134 | 1.000 | 0.119 | ||||||
| Allele 1 | 68 | 56 | Reference | 40 | 16 | Reference | ||||
| Allele 2 | 31 | 22 | 0.349b | 0.862 | 10 | 12 | 0.059c | 3.000 | ||
| Allele 3 | 3 | 0 | 0.000 | 0 | 0 | |||||
| IL-6 | GG | 13 (13.2) | 7 (10.8) | 0.217a | Reference | 4 (6.3) | 3 (4.6) | 0.774a | ||
| GC | 26 (25.5) | 27 (19.4) | 1.929 | 17 (12.5) | 10 (6.9) | 0784 | ||||
| CC | 12 (12.3) | 5 (8.8) | 0.774 | 4 (6.3) | 1 (2.6) | 0.333 | ||||
| HWE p | 0.886 | 0.015 | 0.072 | 0.086 | ||||||
| Allele G | 52 | 41 | 0.833a | Reference | 25 | 16 | 0.545a | Reference | ||
| Allele C | 50 | 37 | 0.939 | 25 | 12 | 0.750 | ||||
| IL-6 | GG | 15 (14.3) | 7 (11.3) | 0.053a | 4 (6.8) | 3 (4.6) | 1.000a | |||
| GA | 24 (25.4) | 28 (19.4) | 2.5 (0.788-8.428) | 18 (12.4) | 10 (6.9) | 0.741 | ||||
| AA | 12 (11.3) | 4 (8.3) | 0.714 | 3 (5.8) | 1 (2.5) | 0.444 | ||||
| HWE p | 0.692 | 0.006 | 0.027 | 0.086 | ||||||
| Allele G | 54 | 42 | 0.904a | Reference | 26 | 16 | 0.0662a | Reference | ||
| Allele A | 48 | 36 | 0.964 | 24 | 12 | 0.813 | ||||
| GG | 40 (40.6) | 27 (27.9) | 0.341a | Reference | 18 (18.5) | 9 (9.5) | 0.723a | |||
| GA | 11 (9.8) | 12 (10.2) | 1.616 | 7 (6) | 5(4.1) | 1.429 | ||||
| AA | 0 (0.6) | 0 (0.9) | – | 0 (0.5) | 0 (0.4) | – | ||||
| HWE p | 0.388 | 0.256 | 0.416 | 0.416 | ||||||
| Allele G | 91 | 66 | 0.489c | Reference | 43 | 23 | 0.900c | Reference | ||
| Allele A | 11 | 12 | 1.504 | 7 | 5 | 1.335 | ||||
χ2, β Fisher-Freeman-Halton, c χ2 with Yates correction, HWE p – Hardy-Weinberg equilibrium p-value
Genotype distributions of studied polymorphisms and the analysis for Hardy-Weinberg equilibrium in infants without and with intrauterine infection; with retinopathy of prematurity (ROP) and without and with ROP and with intrauterine infection
| Gene symbol | Genotypes | No infection | Infection | OR 95% CI | ROP+ | ROP+ | OR 95% CI | |||
|---|---|---|---|---|---|---|---|---|---|---|
| CC | 28 (27.1) | 25 (24.4) | 0.678a | – | 11 (9.9) | 12 (13.2) | 0.155a | – | ||
| CT | 13 (14.9) | 17 (18.2) | 1.465 | 4 (6.1) | 10 (7.7) | 2.292 | ||||
| TT | 3 (2) | 4 (3.4) | 1.493 | 2 (1) | 0 (1.1) | 0.000 | ||||
| HWE p | 0.784 | 0.653 | 0.154 | 0.168 | ||||||
| Allele C | 69 | 67 | 0.384a | Reference | 26 | 34 | 0.393c | Reference | ||
| Allele T | 19 | 25 | 1.355 | 8 | 18 | 1.721 | ||||
| 1/1 | 24 (23.6) | 22 (19.3) | 0.249b | – | 12 (11.5) | 10 (8.9) | 0.342b | – | ||
| 1/2 | 15 (15.8) | 15 (20.3) | 1.091 | 4 (4.9) | 8 (10.2) | 2.4 | ||||
| 1/3 | 2 | 0 | 0.000 | 0 | 0 | – | ||||
| 2/2 | 3 (2.6) | 8 (5.4) | 2.909 | 1 (0.6) | 4 (2.9) | 4.8 | ||||
| 2/3 | 0 | 1 | – | 0 | 0 | – | ||||
| HWE p | 0.758 | 0.079 | 0.432 | 0.315 | ||||||
| Allele 1 | 65 | 59 | 0.258b | Reference | 28 | 28 | 0.117c | Reference | ||
| Allele 2 | 21 | 32 | 1.679 | 6 | 16 | 2.667 | ||||
| Allele 3 | 2 | 1 | 0.551 | 0 | 0 | – | ||||
| GG | 9 (12.6) | 11 (11.5) | 0.379a | – | 4 (5.3) | 3 (5.5) | 0.881a | – | ||
| GC | 29 (21.9) | 24 (23) | 0.677 | 11 (8.4) | 16 (11) | 1.939 | ||||
| CC | 6 (9.5) | 11 (11.5) | 1.5 (0.331-7.025) | 2 (3.3) | 3 (5.5) | 2.000 | ||||
| HWE p | 0.031 | 0.768 | 0.198 | 0.033 | ||||||
| Allele G | 47 | 46 | 0.647a | Reference | 19 | 22 | 0.606a | Reference | ||
| Allele C | 41 | 46 | 1.146 | 15 | 22 | 1.267 | ||||
| IL-6 | GG | 11 (14.2) | 11 (11.5) | 0.308a | – | 4 (5.3) | 3 (5.5) | 0.881a | – | |
| GA | 28 (21.6) | 24 (23) | 0.857 | 11 (8.4) | 16 (11) | 1.939 | ||||
| AA | 5 (8.2) | 11 (11.5) | 2.2 | 2 (3.3) | 3 (5.5) | 2.000 | ||||
| HWE p | 0.049 | 0.768 | 0.198 | 0.033 | ||||||
| Allele G | 50 | 46 | 0.359a | Reference | 19 | 22 | 0.606a | Reference | ||
| Allele A | 38 | 46 | 1.316 | 15 | 22 | 1.267 | ||||
| GG | 31 (32) | 36 (36.5) | 0.472a | – | 12 (12.4) | 15 (15.6) | 1.000a | – | ||
| GA | 13 (11.1) | 10 (9) | 0.662 | 5 (4.2) | 7 (5.9) | 1.12 | ||||
| AA | 0 (0.9) | 0 (0.5) | – | 0 (0.4) | 0 (0.5) | – | ||||
| HWE p | 0.250 | 0.408 | 0.477 | 0.375 | ||||||
| Allele G | 75 | 82 | 0.433a | Reference | 29 | 37 | 0.865c | Reference | ||
| Allele A | 13 | 10 | 0.704 | 5 | 7 | 1.097 | ||||
χ2, β Fisher-Freeman-Halton, c χ2