Literature DB >> 33420133

Sleep classification from wrist-worn accelerometer data using random forests.

Kalaivani Sundararajan1, Sonja Georgievska1, Bart H W Te Lindert2, Philip R Gehrman3, Jennifer Ramautar2, Diego R Mazzotti4, Séverine Sabia5,6, Michael N Weedon7, Eus J W van Someren2, Lars Ridder1, Jian Wang8, Vincent T van Hees9,10.   

Abstract

Accurate and low-cost sleep measurement tools are needed in both clinical and epidemiological research. To this end, wearable accelerometers are widely used as they are both low in price and provide reasonably accurate estimates of movement. Techniques to classify sleep from the high-resolution accelerometer data primarily rely on heuristic algorithms. In this paper, we explore the potential of detecting sleep using Random forests. Models were trained using data from three different studies where 134 adult participants (70 with sleep disorder and 64 good healthy sleepers) wore an accelerometer on their wrist during a one-night polysomnography recording in the clinic. The Random forests were able to distinguish sleep-wake states with an F1 score of 73.93% on a previously unseen test set of 24 participants. Detecting when the accelerometer is not worn was also successful using machine learning ([Formula: see text]), and when combined with our sleep detection models on day-time data provide a sleep estimate that is correlated with self-reported habitual nap behaviour ([Formula: see text]). These Random forest models have been made open-source to aid further research. In line with literature, sleep stage classification turned out to be difficult using only accelerometer data.

Entities:  

Year:  2021        PMID: 33420133      PMCID: PMC7794504          DOI: 10.1038/s41598-020-79217-x

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  22 in total

1.  Automatic sleep/wake identification from wrist activity.

Authors:  R J Cole; D F Kripke; W Gruen; D J Mullaney; J C Gillin
Journal:  Sleep       Date:  1992-10       Impact factor: 5.849

2.  Weighted kappa: nominal scale agreement with provision for scaled disagreement or partial credit.

Authors:  J Cohen
Journal:  Psychol Bull       Date:  1968-10       Impact factor: 17.737

3.  Accelerometer-assessed Physical Activity in Epidemiology: Are Monitors Equivalent?

Authors:  Alex V Rowlands; Evgeny M Mirkes; Tom Yates; Stacey Clemes; Melanie Davies; Kamlesh Khunti; Charlotte L Edwardson
Journal:  Med Sci Sports Exerc       Date:  2018-02       Impact factor: 5.411

4.  Physical activity levels in three Brazilian birth cohorts as assessed with raw triaxial wrist accelerometry.

Authors:  Inácio Cm da Silva; Vincent T van Hees; Virgílio V Ramires; Alan G Knuth; Renata M Bielemann; Ulf Ekelund; Soren Brage; Pedro C Hallal
Journal:  Int J Epidemiol       Date:  2014-10-30       Impact factor: 7.196

5.  Large Scale Population Assessment of Physical Activity Using Wrist Worn Accelerometers: The UK Biobank Study.

Authors:  Aiden Doherty; Dan Jackson; Nils Hammerla; Thomas Plötz; Patrick Olivier; Malcolm H Granat; Tom White; Vincent T van Hees; Michael I Trenell; Christoper G Owen; Stephen J Preece; Rob Gillions; Simon Sheard; Tim Peakman; Soren Brage; Nicholas J Wareham
Journal:  PLoS One       Date:  2017-02-01       Impact factor: 3.240

6.  Statistical machine learning of sleep and physical activity phenotypes from sensor data in 96,220 UK Biobank participants.

Authors:  Matthew Willetts; Sven Hollowell; Louis Aslett; Chris Holmes; Aiden Doherty
Journal:  Sci Rep       Date:  2018-05-21       Impact factor: 4.379

7.  Preschool family irregularity and the development of sleep problems in childhood: a longitudinal study.

Authors:  Maria Elisabeth Koopman-Verhoeff; Fadila Serdarevic; Desana Kocevska; F Fenne Bodrij; Viara R Mileva-Seitz; Irwin Reiss; Manon H J Hillegers; Henning Tiemeier; Charlotte A M Cecil; Frank C Verhulst; Maartje P C M Luijk
Journal:  J Child Psychol Psychiatry       Date:  2019-04-03       Impact factor: 8.982

8.  Ambulatory sleep scoring using accelerometers-distinguishing between nonwear and sleep/wake states.

Authors:  Amna Barouni; Jörg Ottenbacher; Johannes Schneider; Bernd Feige; Dieter Riemann; Anne Herlan; Driss El Hardouz; Darren McLennan
Journal:  PeerJ       Date:  2020-01-02       Impact factor: 2.984

9.  A Novel, Open Access Method to Assess Sleep Duration Using a Wrist-Worn Accelerometer.

Authors:  Vincent T van Hees; Séverine Sabia; Kirstie N Anderson; Sarah J Denton; James Oliver; Michael Catt; Jessica G Abell; Mika Kivimäki; Michael I Trenell; Archana Singh-Manoux
Journal:  PLoS One       Date:  2015-11-16       Impact factor: 3.240

10.  Actigraphic multi-night home-recorded sleep estimates reveal three types of sleep misperception in Insomnia Disorder and good sleepers.

Authors:  Bart H W Te Lindert; Tessa F Blanken; Wisse P van der Meijden; Kim Dekker; Rick Wassing; Ysbrand D van der Werf; Jennifer R Ramautar; Eus J W Van Someren
Journal:  J Sleep Res       Date:  2019-10-31       Impact factor: 3.981

View more
  12 in total

1.  Deep phenotyping for precision medicine in Parkinson's disease.

Authors:  Ann-Kathrin Schalkamp; Nabila Rahman; Jimena Monzón-Sandoval; Cynthia Sandor
Journal:  Dis Model Mech       Date:  2022-06-01       Impact factor: 5.732

2.  Sleep Measurement Using Wrist-Worn Accelerometer Data Compared with Polysomnography.

Authors:  John D Chase; Michael A Busa; John W Staudenmayer; John R Sirard
Journal:  Sensors (Basel)       Date:  2022-07-04       Impact factor: 3.847

3.  Detecting sleep outside the clinic using wearable heart rate devices.

Authors:  Ignacio Perez-Pozuelo; Marius Posa; Joao Palotti; Dimitris Spathis; Kate Westgate; Nicholas Wareham; Cecilia Mascolo; Søren Brage
Journal:  Sci Rep       Date:  2022-05-13       Impact factor: 4.996

Review 4.  Metrics of sleep apnea severity: beyond the apnea-hypopnea index.

Authors:  Atul Malhotra; Indu Ayappa; Najib Ayas; Nancy Collop; Douglas Kirsch; Nigel Mcardle; Reena Mehra; Allan I Pack; Naresh Punjabi; David P White; Daniel J Gottlieb
Journal:  Sleep       Date:  2021-07-09       Impact factor: 6.313

5.  Sleep classification from wrist-worn accelerometer data using random forests.

Authors:  Kalaivani Sundararajan; Sonja Georgievska; Bart H W Te Lindert; Philip R Gehrman; Jennifer Ramautar; Diego R Mazzotti; Séverine Sabia; Michael N Weedon; Eus J W van Someren; Lars Ridder; Jian Wang; Vincent T van Hees
Journal:  Sci Rep       Date:  2021-01-08       Impact factor: 4.379

6.  Manual Annotation of Time in Bed Using Free-Living Recordings of Accelerometry Data.

Authors:  Esben Lykke Skovgaard; Jesper Pedersen; Niels Christian Møller; Anders Grøntved; Jan Christian Brønd
Journal:  Sensors (Basel)       Date:  2021-12-17       Impact factor: 3.576

7.  Exploration of Sleep as a Specific Risk Factor for Poor Metabolic and Mental Health: A UK Biobank Study of 84,404 Participants.

Authors:  Gewei Zhu; Sophie Cassidy; Hugo Hiden; Simon Woodman; Michael Trenell; David A Gunn; Michael Catt; Mark Birch-Machin; Kirstie N Anderson
Journal:  Nat Sci Sleep       Date:  2021-10-22

8.  pyActigraphy: Open-source python package for actigraphy data visualization and analysis.

Authors:  Grégory Hammad; Mathilde Reyt; Nikita Beliy; Marion Baillet; Michele Deantoni; Alexia Lesoinne; Vincenzo Muto; Christina Schmidt
Journal:  PLoS Comput Biol       Date:  2021-10-19       Impact factor: 4.475

Review 9.  Machine Learning for Healthcare Wearable Devices: The Big Picture.

Authors:  Farida Sabry; Tamer Eltaras; Wadha Labda; Khawla Alzoubi; Qutaibah Malluhi
Journal:  J Healthc Eng       Date:  2022-04-18       Impact factor: 3.822

10.  The Promise of Sleep: A Multi-Sensor Approach for Accurate Sleep Stage Detection Using the Oura Ring.

Authors:  Marco Altini; Hannu Kinnunen
Journal:  Sensors (Basel)       Date:  2021-06-23       Impact factor: 3.576

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.