Literature DB >> 33415178

Robustness of brain tumor segmentation.

Sabine Müller1,2,3,4, Joachim Weickert3, Norbert Graf4.   

Abstract

Purpose: The segmentation of brain tumors is one of the most active areas of medical image analysis. While current methods perform superhuman on benchmark data sets, their applicability in daily clinical practice has not been evaluated. In this work, we investigate the generalization behavior of deep neural networks in this scenario. Approach: We evaluate the performance of three state-of-the-art methods, a basic U-Net architecture, and a cascadic Mumford-Shah approach. We also propose two simple modifications (which do not change the topology) to improve generalization performance.
Results: In these experiments, we show that a well-trained U-network shows the best generalization behavior and is sufficient to solve this segmentation problem. We illustrate why extensions of this model in a realistic scenario can be not only pointless but even harmful. Conclusions: We conclude from these experiments that the generalization performance of deep neural networks is severely limited in medical image analysis especially in the area of brain tumor segmentation. In our opinion, current topologies are optimized for the actual benchmark data set but are not directly applicable in daily clinical practice.
© 2020 Society of Photo-Optical Instrumentation Engineers (SPIE).

Entities:  

Keywords:  brain tumors; deep learning; generalization; segmentation

Year:  2020        PMID: 33415178      PMCID: PMC7773029          DOI: 10.1117/1.JMI.7.6.064006

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  7 in total

1.  Updated response assessment criteria for high-grade gliomas: response assessment in neuro-oncology working group.

Authors:  Patrick Y Wen; David R Macdonald; David A Reardon; Timothy F Cloughesy; A Gregory Sorensen; Evanthia Galanis; John Degroot; Wolfgang Wick; Mark R Gilbert; Andrew B Lassman; Christina Tsien; Tom Mikkelsen; Eric T Wong; Marc C Chamberlain; Roger Stupp; Kathleen R Lamborn; Michael A Vogelbaum; Martin J van den Bent; Susan M Chang
Journal:  J Clin Oncol       Date:  2010-03-15       Impact factor: 44.544

2.  Fast Edge Detection Using Structured Forests.

Authors:  Piotr Dollár; C Lawrence Zitnick
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2015-08       Impact factor: 6.226

Review 3.  Current status of immunotherapy and gene therapy for high-grade gliomas.

Authors:  James C Marsh; Justin Goldfarb; Timothy D Shafman; Aidnag Z Diaz
Journal:  Cancer Control       Date:  2013-01       Impact factor: 3.302

4.  Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features.

Authors:  Spyridon Bakas; Hamed Akbari; Aristeidis Sotiras; Michel Bilello; Martin Rozycki; Justin S Kirby; John B Freymann; Keyvan Farahani; Christos Davatzikos
Journal:  Sci Data       Date:  2017-09-05       Impact factor: 6.444

5.  Benchmarking Wilms' tumor in multisequence MRI data: why does current clinical practice fail? Which popular segmentation algorithms perform well?

Authors:  Sabine Müller; Iva Farag; Joachim Weickert; Yvonne Braun; André Lollert; Jonas Dobberstein; Andreas Hötker; Norbert Graf
Journal:  J Med Imaging (Bellingham)       Date:  2019-07-19

6.  Deep Learning and Texture-Based Semantic Label Fusion for Brain Tumor Segmentation.

Authors:  L Vidyaratne; M Alam; Z Shboul; K M Iftekharuddin
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-02-27

Review 7.  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Authors:  Bjoern H Menze; Andras Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth Gerstner; Marc-André Weber; Tal Arbel; Brian B Avants; Nicholas Ayache; Patricia Buendia; D Louis Collins; Nicolas Cordier; Jason J Corso; Antonio Criminisi; Tilak Das; Hervé Delingette; Çağatay Demiralp; Christopher R Durst; Michel Dojat; Senan Doyle; Joana Festa; Florence Forbes; Ezequiel Geremia; Ben Glocker; Polina Golland; Xiaotao Guo; Andac Hamamci; Khan M Iftekharuddin; Raj Jena; Nigel M John; Ender Konukoglu; Danial Lashkari; José Antonió Mariz; Raphael Meier; Sérgio Pereira; Doina Precup; Stephen J Price; Tammy Riklin Raviv; Syed M S Reza; Michael Ryan; Duygu Sarikaya; Lawrence Schwartz; Hoo-Chang Shin; Jamie Shotton; Carlos A Silva; Nuno Sousa; Nagesh K Subbanna; Gabor Szekely; Thomas J Taylor; Owen M Thomas; Nicholas J Tustison; Gozde Unal; Flor Vasseur; Max Wintermark; Dong Hye Ye; Liang Zhao; Binsheng Zhao; Darko Zikic; Marcel Prastawa; Mauricio Reyes; Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2014-12-04       Impact factor: 10.048

  7 in total

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