Literature DB >> 33413996

Revisiting Extracellular RNA Release, Processing, and Function.

Juan Pablo Tosar1, Kenneth Witwer2, Alfonso Cayota3.   

Abstract

It is assumed that RNAs enriched in extracellular samples were selected for release by their parental cells. However, recent descriptions of extracellular RNA (exRNA) biogenesis and their differential stabilities question this assumption, as they could produce identical outcomes. Here, we share our opinion about the importance of considering both selective and nonselective mechanisms for RNA release into the extracellular environment. In doing so, we provide new perspectives on RNA-mediated intercellular communication, including an analogy to communication through social media. We also argue that technical limitations have restricted the study of some of the most abundant exRNAs, both inside and outside extracellular vesicles (EVs). These RNAs may be better positioned to induce a response in recipient cells compared with low abundance miRNAs.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA secretion; exosomes; extracellular RNAs; liquid biopsy; microvesicles

Mesh:

Substances:

Year:  2021        PMID: 33413996      PMCID: PMC8122015          DOI: 10.1016/j.tibs.2020.12.008

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   14.264


  60 in total

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Authors:  Bastian Fromm; Juan Pablo Tosar; Yin Lu; Marc K Halushka; Kenneth W Witwer
Journal:  J Nutr       Date:  2018-09-01       Impact factor: 4.798

2.  Cancer exosomes perform cell-independent microRNA biogenesis and promote tumorigenesis.

Authors:  Sonia A Melo; Hikaru Sugimoto; Joyce T O'Connell; Noritoshi Kato; Alberto Villanueva; August Vidal; Le Qiu; Edward Vitkin; Lev T Perelman; Carlos A Melo; Anthony Lucci; Cristina Ivan; George A Calin; Raghu Kalluri
Journal:  Cancer Cell       Date:  2014-10-23       Impact factor: 31.743

3.  Extracellular metabolic energetics can promote cancer progression.

Authors:  Jia Min Loo; Alexis Scherl; Alexander Nguyen; Fung Ying Man; Ethan Weinberg; Zhaoshi Zeng; Leonard Saltz; Philip B Paty; Sohail F Tavazoie
Journal:  Cell       Date:  2015-01-15       Impact factor: 41.582

4.  The interactions with Ro60 and La differentially affect nuclear export of hY1 RNA.

Authors:  F H Simons; S A Rutjes; W J van Venrooij; G J Pruijn
Journal:  RNA       Date:  1996-03       Impact factor: 4.942

5.  High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases.

Authors:  Yidan Qin; Jun Yao; Douglas C Wu; Ryan M Nottingham; Sabine Mohr; Scott Hunicke-Smith; Alan M Lambowitz
Journal:  RNA       Date:  2015-11-09       Impact factor: 4.942

6.  Adipose-derived circulating miRNAs regulate gene expression in other tissues.

Authors:  Thomas Thomou; Marcelo A Mori; Jonathan M Dreyfuss; Masahiro Konishi; Masaji Sakaguchi; Christian Wolfrum; Tata Nageswara Rao; Jonathon N Winnay; Ruben Garcia-Martin; Steven K Grinspoon; Phillip Gorden; C Ronald Kahn
Journal:  Nature       Date:  2017-02-15       Impact factor: 49.962

7.  Obstacles and opportunities in the functional analysis of extracellular vesicle RNA - an ISEV position paper.

Authors:  Bogdan Mateescu; Emma J K Kowal; Bas W M van Balkom; Sabine Bartel; Suvendra N Bhattacharyya; Edit I Buzás; Amy H Buck; Paola de Candia; Franklin W N Chow; Saumya Das; Tom A P Driedonks; Lola Fernández-Messina; Franziska Haderk; Andrew F Hill; Jennifer C Jones; Kendall R Van Keuren-Jensen; Charles P Lai; Cecilia Lässer; Italia di Liegro; Taral R Lunavat; Magdalena J Lorenowicz; Sybren L N Maas; Imre Mäger; Maria Mittelbrunn; Stefan Momma; Kamalika Mukherjee; Muhammed Nawaz; D Michiel Pegtel; Michael W Pfaffl; Raymond M Schiffelers; Hidetoshi Tahara; Clotilde Théry; Juan Pablo Tosar; Marca H M Wauben; Kenneth W Witwer; Esther N M Nolte-'t Hoen
Journal:  J Extracell Vesicles       Date:  2017-03-07

8.  Transfer of Functional Cargo in Exomeres.

Authors:  Qin Zhang; James N Higginbotham; Dennis K Jeppesen; Yu-Ping Yang; Wei Li; Eliot T McKinley; Ramona Graves-Deal; Jie Ping; Colleen M Britain; Kaitlyn A Dorsett; Celine L Hartman; David A Ford; Ryan M Allen; Kasey C Vickers; Qi Liu; Jeffrey L Franklin; Susan L Bellis; Robert J Coffey
Journal:  Cell Rep       Date:  2019-04-04       Impact factor: 9.423

9.  Broad role for YBX1 in defining the small noncoding RNA composition of exosomes.

Authors:  Matthew J Shurtleff; Jun Yao; Yidan Qin; Ryan M Nottingham; Morayma M Temoche-Diaz; Randy Schekman; Alan M Lambowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-10       Impact factor: 11.205

10.  eIF4G has intrinsic G-quadruplex binding activity that is required for tiRNA function.

Authors:  Shawn M Lyons; Prakash Kharel; Yasutoshi Akiyama; Sandeep Ojha; Dhwani Dave; Vladimir Tsvetkov; William Merrick; Pavel Ivanov; Paul Anderson
Journal:  Nucleic Acids Res       Date:  2020-06-19       Impact factor: 16.971

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  12 in total

Review 1.  Non-viral vectors for RNA delivery.

Authors:  Yi Yan; Xiao-Yu Liu; An Lu; Xiang-Yu Wang; Lin-Xia Jiang; Jian-Cheng Wang
Journal:  J Control Release       Date:  2022-01-10       Impact factor: 9.776

2.  In or out? The diversity and location of apoplastic RNAs.

Authors:  Thomas A DeFalco
Journal:  Plant Cell       Date:  2022-04-26       Impact factor: 12.085

3.  RI-SEC-seq: Comprehensive Profiling of Nonvesicular Extracellular RNAs with Different Stabilities.

Authors:  Juan Pablo Tosar; Fabiana Gámbaro; Mauricio Castellano; Alfonso Cayota
Journal:  Bio Protoc       Date:  2021-02-20

Review 4.  Technological Approaches in the Analysis of Extracellular Vesicle Nucleotide Sequences.

Authors:  Tine Tesovnik; Barbara Jenko Bizjan; Robert Šket; Maruša Debeljak; Tadej Battelino; Jernej Kovač
Journal:  Front Bioeng Biotechnol       Date:  2021-12-23

5.  Exosomal miR-338-3p suppresses non-small-cell lung cancer cells metastasis by inhibiting CHL1 through the MAPK signaling pathway.

Authors:  Wen Tian; Xianglin Yang; He Yang; Meiwen Lv; Xinran Sun; Baosen Zhou
Journal:  Cell Death Dis       Date:  2021-10-30       Impact factor: 9.685

Review 6.  Roles and mechanisms of exosomal non-coding RNAs in human health and diseases.

Authors:  Chen Li; Yu-Qing Ni; Hui Xu; Qun-Yan Xiang; Yan Zhao; Jun-Kun Zhan; Jie-Yu He; Shuang Li; You-Shuo Liu
Journal:  Signal Transduct Target Ther       Date:  2021-11-10

Review 7.  Do Extracellular RNAs Provide Insight into Uveal Melanoma Biology?

Authors:  Cristina Barbagallo; Chiara Bianca Maria Platania; Filippo Drago; Davide Barbagallo; Cinzia Di Pietro; Michele Purrello; Claudio Bucolo; Marco Ragusa
Journal:  Cancers (Basel)       Date:  2021-11-25       Impact factor: 6.639

8.  Small nucleolar RNAs in plasma extracellular vesicles and their discriminatory power as diagnostic biomarkers of Alzheimer's disease.

Authors:  Nicholas F Fitz; Jiebiao Wang; M Ilyas Kamboh; Radosveta Koldamova; Iliya Lefterov
Journal:  Neurobiol Dis       Date:  2021-08-17       Impact factor: 7.046

Review 9.  Multifaceted roles of extracellular RNAs in different diseases.

Authors:  Abdullah Muhammad Sohail; Muhammad Babar Khawar; Ali Afzal; Ali Hassan; Sara Shahzaman; Ahmed Ali
Journal:  Mil Med Res       Date:  2022-08-11

Review 10.  In sickness and in health: The functional role of extracellular vesicles in physiology and pathology in vivo: Part I: Health and Normal Physiology: Part I: Health and Normal Physiology.

Authors:  Abi G Yates; Ryan C Pink; Uta Erdbrügger; Pia R-M Siljander; Elizabeth R Dellar; Paschalia Pantazi; Naveed Akbar; William R Cooke; Manu Vatish; Emmanuel Dias-Neto; Daniel C Anthony; Yvonne Couch
Journal:  J Extracell Vesicles       Date:  2022-01
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