Literature DB >> 33407840

Transposable element-derived sequences in vertebrate development.

Ema Etchegaray1, Magali Naville2, Jean-Nicolas Volff2, Zofia Haftek-Terreau2.   

Abstract

Transposable elements (TEs) are major components of all vertebrate genomes that can cause deleterious insertions and genomic instability. However, depending on the specific genomic context of their insertion site, TE sequences can sometimes get positively selected, leading to what are called "exaptation" events. TE sequence exaptation constitutes an important source of novelties for gene, genome and organism evolution, giving rise to new regulatory sequences, protein-coding exons/genes and non-coding RNAs, which can play various roles beneficial to the host. In this review, we focus on the development of vertebrates, which present many derived traits such as bones, adaptive immunity and a complex brain. We illustrate how TE-derived sequences have given rise to developmental innovations in vertebrates and how they thereby contributed to the evolutionary success of this lineage.

Entities:  

Keywords:  Development; Exaptation; Genetic innovation; Genome evolution; Transposable elements; Vertebrates

Year:  2021        PMID: 33407840     DOI: 10.1186/s13100-020-00229-5

Source DB:  PubMed          Journal:  Mob DNA


  276 in total

Review 1.  The outs and ins of transposition: from mu to kangaroo.

Authors:  M Joan Curcio; Keith M Derbyshire
Journal:  Nat Rev Mol Cell Biol       Date:  2003-11       Impact factor: 94.444

2.  Controlling elements and the gene.

Authors:  B MCCLINTOCK
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1956

Review 3.  Mobile elements: drivers of genome evolution.

Authors:  Haig H Kazazian
Journal:  Science       Date:  2004-03-12       Impact factor: 47.728

4.  Genetics: junk DNA as an evolutionary force.

Authors:  Christian Biémont; Cristina Vieira
Journal:  Nature       Date:  2006-10-05       Impact factor: 49.962

Review 5.  A unified classification system for eukaryotic transposable elements.

Authors:  Thomas Wicker; François Sabot; Aurélie Hua-Van; Jeffrey L Bennetzen; Pierre Capy; Boulos Chalhoub; Andrew Flavell; Philippe Leroy; Michele Morgante; Olivier Panaud; Etienne Paux; Phillip SanMiguel; Alan H Schulman
Journal:  Nat Rev Genet       Date:  2007-12       Impact factor: 53.242

Review 6.  The take and give between retrotransposable elements and their hosts.

Authors:  Arthur Beauregard; M Joan Curcio; Marlene Belfort
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

7.  A universal classification of eukaryotic transposable elements implemented in Repbase.

Authors:  Vladimir V Kapitonov; Jerzy Jurka
Journal:  Nat Rev Genet       Date:  2008-05       Impact factor: 53.242

8.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

Review 9.  Restricting retrotransposons: a review.

Authors:  John L Goodier
Journal:  Mob DNA       Date:  2016-08-11

Review 10.  Ten things you should know about transposable elements.

Authors:  Guillaume Bourque; Kathleen H Burns; Mary Gehring; Vera Gorbunova; Andrei Seluanov; Molly Hammell; Michaël Imbeault; Zsuzsanna Izsvák; Henry L Levin; Todd S Macfarlan; Dixie L Mager; Cédric Feschotte
Journal:  Genome Biol       Date:  2018-11-19       Impact factor: 13.583

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  14 in total

1.  ARID1A loss derepresses a group of human endogenous retrovirus-H loci to modulate BRD4-dependent transcription.

Authors:  Chunhong Yu; Xiaoyun Lei; Fang Chen; Song Mao; Lu Lv; Honglu Liu; Xueying Hu; Runhan Wang; Licong Shen; Na Zhang; Yang Meng; Yunfan Shen; Jiale Chen; Pishun Li; Shi Huang; Changwei Lin; Zhuohua Zhang; Kai Yuan
Journal:  Nat Commun       Date:  2022-06-17       Impact factor: 17.694

2.  Diversity of Harbinger-like Transposons in Teleost Fish Genomes.

Authors:  Ema Etchegaray; Corentin Dechaud; Jérémy Barbier; Magali Naville; Jean-Nicolas Volff
Journal:  Animals (Basel)       Date:  2022-05-31       Impact factor: 3.231

Review 3.  Roles of transposable elements in the regulation of mammalian transcription.

Authors:  Raquel Fueyo; Julius Judd; Cedric Feschotte; Joanna Wysocka
Journal:  Nat Rev Mol Cell Biol       Date:  2022-02-28       Impact factor: 113.915

Review 4.  Retrotransposons as Drivers of Mammalian Brain Evolution.

Authors:  Roberto Ferrari; Nicole Grandi; Enzo Tramontano; Giorgio Dieci
Journal:  Life (Basel)       Date:  2021-04-22

5.  Unearthing LTR Retrotransposon gag Genes Co-opted in the Deep Evolution of Eukaryotes.

Authors:  Jianhua Wang; Guan-Zhu Han
Journal:  Mol Biol Evol       Date:  2021-07-29       Impact factor: 16.240

Review 6.  The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation.

Authors:  Muthusamy Ramakrishnan; Lakkakula Satish; Ruslan Kalendar; Mathiyazhagan Narayanan; Sabariswaran Kandasamy; Anket Sharma; Abolghassem Emamverdian; Qiang Wei; Mingbing Zhou
Journal:  Int J Mol Sci       Date:  2021-10-21       Impact factor: 5.923

Review 7.  The Evolutionary Volte-Face of Transposable Elements: From Harmful Jumping Genes to Major Drivers of Genetic Innovation.

Authors:  Melody Nicolau; Nathalie Picault; Guillaume Moissiard
Journal:  Cells       Date:  2021-10-29       Impact factor: 6.600

Review 8.  Taming, Domestication and Exaptation: Trajectories of Transposable Elements in Genomes.

Authors:  Pierre Capy
Journal:  Cells       Date:  2021-12-20       Impact factor: 6.600

9.  Identification of the Complex Interplay Between Nematode-Related lncRNAs and Their Target Genes in Glycine max L.

Authors:  Masoumeh Ahmadi Khoei; Marzieh Karimi; Roya Karamian; Sahand Amini; Aboozar Soorni
Journal:  Front Plant Sci       Date:  2021-12-10       Impact factor: 5.753

Review 10.  mRNA Trafficking in the Nervous System: A Key Mechanism of the Involvement of Activity-Regulated Cytoskeleton-Associated Protein (Arc) in Synaptic Plasticity.

Authors:  Michal Fila; Laura Diaz; Joanna Szczepanska; Elzbieta Pawlowska; Janusz Blasiak
Journal:  Neural Plast       Date:  2021-09-23       Impact factor: 3.599

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