Literature DB >> 3340546

Precise nucleosome positioning in the promoter of the chicken beta A globin gene.

P Kefalas1, F C Gray, J Allan.   

Abstract

Histone octamers were reconstituted onto 5' end-labelled DNA fragments derived from the promoter region of the chicken beta A globin gene. The location of the reconstituted histone octamer with respect to the DNA sequence of each fragment was assessed by Exonuclease III digestion of purified nucleosome monomers. By this approach we have found a strong preference for histone octamers to be positioned over nucleotides -206 to -62 relative to the gene cap site. This stretch of DNA contains all those 5' beta globin sequences which, by DNase footprinting, bind specific protein factors and incorporates three promoter consensus sequence motifs. The upstream terminal 32 base pairs of this DNA segment contains the binding sites for the erythrocyte specific G-string binding protein and transcription factor Spl and appears to be relatively weakly bound to the histone octamer.

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Year:  1988        PMID: 3340546      PMCID: PMC334675          DOI: 10.1093/nar/16.2.501

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  20 in total

1.  Sequence-specific positioning of core histones on an 860 base-pair DNA. Experiment and theory.

Authors:  H R Drew; C R Calladine
Journal:  J Mol Biol       Date:  1987-05-05       Impact factor: 5.469

2.  Three regions upstream from the cap site are required for efficient and accurate transcription of the rabbit beta-globin gene in mouse 3T6 cells.

Authors:  P Dierks; A van Ooyen; M D Cochran; C Dobkin; J Reiser; C Weissmann
Journal:  Cell       Date:  1983-03       Impact factor: 41.582

3.  The promoter-specific transcription factor Sp1 binds to upstream sequences in the SV40 early promoter.

Authors:  W S Dynan; R Tjian
Journal:  Cell       Date:  1983-11       Impact factor: 41.582

4.  Analysis of the adult chicken beta-globin gene. Nucleotide sequence of the locus, microheterogeneity at the 5'-end of beta-globin mRNA, and aberrant nuclear RNA species.

Authors:  M Dolan; J B Dodgson; J D Engel
Journal:  J Biol Chem       Date:  1983-03-25       Impact factor: 5.157

5.  Reversible dissociation of linker histone from chromatin with preservation of internucleosomal repeat.

Authors:  J Allan; D Z Staynov; H Gould
Journal:  Proc Natl Acad Sci U S A       Date:  1980-02       Impact factor: 11.205

6.  Nucleosomal DNA is digested to repeats of 10 bases by exonuclease III.

Authors:  D Riley; H Weintraub
Journal:  Cell       Date:  1978-02       Impact factor: 41.582

7.  Site-specific phasing in the chromatin of the rDNA in Dictyostelium discoideum.

Authors:  C A Edwards; R A Firtel
Journal:  J Mol Biol       Date:  1984-11-25       Impact factor: 5.469

8.  Specific factor conferring nuclease hypersensitivity at the 5' end of the chicken adult beta-globin gene.

Authors:  B M Emerson; G Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  1984-01       Impact factor: 11.205

9.  Chromatin structure at the replication origins and transcription-initiation regions of the ribosomal RNA genes of Tetrahymena.

Authors:  T E Palen; T R Cech
Journal:  Cell       Date:  1984-04       Impact factor: 41.582

10.  A 145-base pair DNA sequence that positions itself precisely and asymmetrically on the nucleosome core.

Authors:  N Ramsay; G Felsenfeld; B M Rushton; J D McGhee
Journal:  EMBO J       Date:  1984-11       Impact factor: 11.598

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  8 in total

1.  Ultrastructure of transcriptionally competent chromatin.

Authors:  L Locklear; J A Ridsdale; D P Bazett-Jones; J R Davie
Journal:  Nucleic Acids Res       Date:  1990-12-11       Impact factor: 16.971

2.  The promoter and enhancer of the inactive chicken beta-globin gene contains precisely positioned nucleosomes.

Authors:  R Buckle; M Balmer; A Yenidunya; J Allan
Journal:  Nucleic Acids Res       Date:  1991-03-25       Impact factor: 16.971

3.  Evidence for torsional stress in transcriptionally activated chromatin.

Authors:  M W Leonard; R K Patient
Journal:  Mol Cell Biol       Date:  1991-12       Impact factor: 4.272

4.  Properties of BGP1, a poly(dG)-binding protein from chicken erythrocytes.

Authors:  S P Clark; C D Lewis; G Felsenfeld
Journal:  Nucleic Acids Res       Date:  1990-09-11       Impact factor: 16.971

5.  Modified curved DNA that could allow local DNA underwinding at the nucleosomal pseudodyad fails to position a nucleosome in vivo.

Authors:  H G Patterton; R T Simpson
Journal:  Nucleic Acids Res       Date:  1995-10-25       Impact factor: 16.971

6.  Oligo[d(C).(G)] runs exhibit a helical repeat of 11.1 bp in solution and cause slight DNA curvature when properly phased.

Authors:  M Biburger; M Niederweis; W Hillen
Journal:  Nucleic Acids Res       Date:  1994-05-11       Impact factor: 16.971

7.  Purification of an oligo(dG).oligo(dC)-binding sea urchin nuclear protein, suGF1: a family of G-string factors involved in gene regulation during development.

Authors:  J Hapgood; D Patterton
Journal:  Mol Cell Biol       Date:  1994-02       Impact factor: 4.272

8.  Asymmetry and polarity of nucleosomes in chicken erythrocyte chromatin.

Authors:  S C Satchwell; A A Travers
Journal:  EMBO J       Date:  1989-01       Impact factor: 11.598

  8 in total

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