Literature DB >> 33404886

Shedding Light on the Black Box: Explaining Deep Neural Network Prediction of Clinical Outcomes.

Yijun Shao1,2, Yan Cheng3,4, Rashmee U Shah5, Charlene R Weir6,7, Bruce E Bray5,7, Qing Zeng-Treitler3,4.   

Abstract

Deep neural network models are emerging as an important method in healthcare delivery, following the recent success in other domains such as image recognition. Due to the multiple non-linear inner transformations, deep neural networks are viewed by many as black boxes. For practical use, deep learning models require explanations that are intuitive to clinicians. In this study, we developed a deep neural network model to predict outcomes following major cardiovascular procedures, using temporal image representation of past medical history as input. We created a novel explanation for the prediction of the model by defining impact scores that associate clinical observations with the outcome. For comparison, a logistic regression model was fitted to the same dataset. We compared the impact scores and log odds ratios by calculating three types of correlations, which provided a partial validation of the impact scores. The deep neural network model achieved an area under the receiver operating characteristics curve (AUC) of 0.787, compared to 0.746 for the logistic regression model. Moderate correlations were found between the impact scores and the log odds ratios. Impact scores generated by the explanation algorithm has the potential to shed light on the "black box" deep neural network model and could facilitate its adoption by clinicians.

Entities:  

Keywords:  Clinical outcome; Deep neural network; Machine learning; Predictive model

Mesh:

Year:  2021        PMID: 33404886      PMCID: PMC7983057          DOI: 10.1007/s10916-020-01701-8

Source DB:  PubMed          Journal:  J Med Syst        ISSN: 0148-5598            Impact factor:   4.460


  18 in total

Review 1.  Frailty: the missing element in predicting operative mortality.

Authors:  Joanna Chikwe; David H Adams
Journal:  Semin Thorac Cardiovasc Surg       Date:  2010

2.  Mastering the game of Go with deep neural networks and tree search.

Authors:  David Silver; Aja Huang; Chris J Maddison; Arthur Guez; Laurent Sifre; George van den Driessche; Julian Schrittwieser; Ioannis Antonoglou; Veda Panneershelvam; Marc Lanctot; Sander Dieleman; Dominik Grewe; John Nham; Nal Kalchbrenner; Ilya Sutskever; Timothy Lillicrap; Madeleine Leach; Koray Kavukcuoglu; Thore Graepel; Demis Hassabis
Journal:  Nature       Date:  2016-01-28       Impact factor: 49.962

3.  Understanding logistic regression analysis in clinical reports: an introduction.

Authors:  Richard P Anderson; Ruyun Jin; Gary L Grunkemeier
Journal:  Ann Thorac Surg       Date:  2003-03       Impact factor: 4.330

4.  TURF: toward a unified framework of EHR usability.

Authors:  Jiajie Zhang; Muhammad F Walji
Journal:  J Biomed Inform       Date:  2011-08-16       Impact factor: 6.317

5.  A comparison of models for predicting early hospital readmissions.

Authors:  Joseph Futoma; Jonathan Morris; Joseph Lucas
Journal:  J Biomed Inform       Date:  2015-06-01       Impact factor: 6.317

Review 6.  Deep learning for healthcare: review, opportunities and challenges.

Authors:  Riccardo Miotto; Fei Wang; Shuang Wang; Xiaoqian Jiang; Joel T Dudley
Journal:  Brief Bioinform       Date:  2018-11-27       Impact factor: 11.622

7.  Posttraumatic stress symptoms and predicted mortality in patients with implantable cardioverter-defibrillators: results from the prospective living with an implanted cardioverter-defibrillator study.

Authors:  Karl-Heinz Ladwig; Jens Baumert; Birgitt Marten-Mittag; Christof Kolb; Bernhard Zrenner; Claus Schmitt
Journal:  Arch Gen Psychiatry       Date:  2008-11

8.  On Pixel-Wise Explanations for Non-Linear Classifier Decisions by Layer-Wise Relevance Propagation.

Authors:  Sebastian Bach; Alexander Binder; Grégoire Montavon; Frederick Klauschen; Klaus-Robert Müller; Wojciech Samek
Journal:  PLoS One       Date:  2015-07-10       Impact factor: 3.240

9.  Role of frailty assessment in patients undergoing cardiac interventions.

Authors:  Rebecca Rowe; Javaid Iqbal; Rachel Murali-Krishnan; Ayyaz Sultan; Rachel Orme; Norman Briffa; Martin Denvir; Julian Gunn
Journal:  Open Heart       Date:  2014-02-01

Review 10.  Deep Learning in Medical Imaging: General Overview.

Authors:  June-Goo Lee; Sanghoon Jun; Young-Won Cho; Hyunna Lee; Guk Bae Kim; Joon Beom Seo; Namkug Kim
Journal:  Korean J Radiol       Date:  2017-05-19       Impact factor: 3.500

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  1 in total

1.  An Intelligent Healthcare Cyber Physical Framework for Encephalitis Diagnosis Based on Information Fusion and Soft-Computing Techniques.

Authors:  Aditya Gupta; Amritpal Singh
Journal:  New Gener Comput       Date:  2022-06-14       Impact factor: 1.180

  1 in total

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