Literature DB >> 33402674

Circulating tRNA-derived small RNAs (tsRNAs) signature for the diagnosis and prognosis of breast cancer.

Jingyi Wang1,2, Ge Ma1,2, Han Ge1, Xu Han1, Xinrui Mao1, Xinyang Wang1, Jordee Selvamanee Veeramootoo1, Tiansong Xia3,4, Xiaoan Liu5,6, Shui Wang7,8.   

Abstract

Liquid biopsy is noninvasive and convenient to detect cancer-derived materials in blood or other body fluids. The aim of this study was to identify tRNA-derived small RNAs (tsRNAs) in plasma that could distinguish patients with breast cancer (BC) from healthy controls. Basing on high-throughput sequencing, 15 significantly upregulated tsRNAs were selected and assessed in cell supernatants and cell lines. 6 tsRNAs were identified and verified in a large cohort of 120 patients with BC and 112 healthy controls. tRF-Arg-CCT-017, tRF-Gly-CCC-001, and tiRNA-Phe-GAA-003 could serve as novel diagnostic biomarkers. Meanwhile, tRF-Arg-CCT-017 and tiRNA-Phe-GAA-003 could also act as prognostic biomarkers. Target genes of these tsRNAs were related to the development of cancers. These results suggested that specific tsRNAs in plasma might serve as diagnostic and prognostic biomarkers of BC.

Entities:  

Year:  2021        PMID: 33402674      PMCID: PMC7785726          DOI: 10.1038/s41523-020-00211-7

Source DB:  PubMed          Journal:  NPJ Breast Cancer        ISSN: 2374-4677


  16 in total

1.  Cancer statistics, 2019.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2019-01-08       Impact factor: 508.702

2.  Toward a more complete view of tRNA biology.

Authors:  Richard Giegé
Journal:  Nat Struct Mol Biol       Date:  2008-10-06       Impact factor: 15.369

3.  Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells.

Authors:  Nicola Guzzi; Maciej Cieśla; Phuong Cao Thi Ngoc; Stefan Lang; Sonali Arora; Marios Dimitriou; Kristyna Pimková; Mikael N E Sommarin; Roberto Munita; Michal Lubas; Yiting Lim; Kazuki Okuyama; Shamit Soneji; Göran Karlsson; Jenny Hansson; Göran Jönsson; Anders H Lund; Mikael Sigvardsson; Eva Hellström-Lindberg; Andrew C Hsieh; Cristian Bellodi
Journal:  Cell       Date:  2018-04-05       Impact factor: 41.582

4.  tsRNA signatures in cancer.

Authors:  Veronica Balatti; Giovanni Nigita; Dario Veneziano; Alessandra Drusco; Gary S Stein; Terri L Messier; Nicholas H Farina; Jane B Lian; Luisa Tomasello; Chang-Gong Liu; Alexey Palamarchuk; Jonathan R Hart; Catherine Bell; Mariantonia Carosi; Edoardo Pescarmona; Letizia Perracchio; Maria Diodoro; Andrea Russo; Anna Antenucci; Paolo Visca; Antonio Ciardi; Curtis C Harris; Peter K Vogt; Yuri Pekarsky; Carlo M Croce
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-10       Impact factor: 11.205

5.  A tRNA fragment, 5'-tiRNAVal, suppresses the Wnt/β-catenin signaling pathway by targeting FZD3 in breast cancer.

Authors:  Dongping Mo; Pan Jiang; Yining Yang; Xuelian Mao; Xuyan Tan; Xun Tang; Da Wei; Bing Li; Xiaoming Wang; Li Tang; Feng Yan
Journal:  Cancer Lett       Date:  2019-05-09       Impact factor: 8.679

6.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.

Authors:  Ben Langmead; Cole Trapnell; Mihai Pop; Steven L Salzberg
Journal:  Genome Biol       Date:  2009-03-04       Impact factor: 13.583

Review 7.  Biogenesis and Function of Transfer RNA-Related Fragments (tRFs).

Authors:  Pankaj Kumar; Canan Kuscu; Anindya Dutta
Journal:  Trends Biochem Sci       Date:  2016-06-01       Impact factor: 13.807

8.  Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement.

Authors:  Hani Goodarzi; Xuhang Liu; Hoang C B Nguyen; Steven Zhang; Lisa Fish; Sohail F Tavazoie
Journal:  Cell       Date:  2015-05-07       Impact factor: 41.582

9.  tDRmapper: challenges and solutions to mapping, naming, and quantifying tRNA-derived RNAs from human small RNA-sequencing data.

Authors:  Sara R Selitsky; Praveen Sethupathy
Journal:  BMC Bioinformatics       Date:  2015-11-04       Impact factor: 3.169

10.  A transfer-RNA-derived small RNA regulates ribosome biogenesis.

Authors:  Hak Kyun Kim; Gabriele Fuchs; Shengchun Wang; Wei Wei; Yue Zhang; Hyesuk Park; Biswajoy Roy-Chaudhuri; Pan Li; Jianpeng Xu; Kirk Chu; Feijie Zhang; Mei-Sze Chua; Samuel So; Qiangfeng Cliff Zhang; Peter Sarnow; Mark A Kay
Journal:  Nature       Date:  2017-11-29       Impact factor: 49.962

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  13 in total

Review 1.  tRNA-derived fragments (tRFs) in cancer.

Authors:  Yuri Pekarsky; Veronica Balatti; Carlo M Croce
Journal:  J Cell Commun Signal       Date:  2022-08-29       Impact factor: 5.908

2.  AS-tDR-007872: A Novel tRNA-Derived Small RNA Acts an Important Role in Non-Small-Cell Lung Cancer.

Authors:  Hang Fan; Hongbing Liu; Yanling Lv; Yong Song
Journal:  Comput Math Methods Med       Date:  2022-06-16       Impact factor: 2.809

3.  Comprehensive Analysis of a tRNA-Derived Small RNA in Colorectal Cancer.

Authors:  Yong Zhu; Shaoqiu Chen; Zhougui Ling; Andrew Winnicki; Lilly Xu; Shaun Xu; Ting Gong; Bin Jiang; Gang Huang; Youping Deng
Journal:  Front Oncol       Date:  2021-08-04       Impact factor: 5.738

Review 4.  Transfer RNA-Derived Small RNAs: Novel Regulators and Biomarkers of Cancers.

Authors:  Bi-Fei Fu; Chao-Yang Xu
Journal:  Front Oncol       Date:  2022-04-28       Impact factor: 5.738

5.  Evaluation of serum tRF-23-Q99P9P9NDD as a potential biomarker for the clinical diagnosis of gastric cancer.

Authors:  Yu Zhang; Xinliang Gu; Xinyue Qin; Yuejiao Huang; Shaoqing Ju
Journal:  Mol Med       Date:  2022-06-11       Impact factor: 6.376

Review 6.  Transfer RNA-derived small RNA: an emerging small non-coding RNA with key roles in cancer.

Authors:  Xinliang Gu; Yu Zhang; Xinyue Qin; Shuo Ma; Yuejiao Huang; Shaoqing Ju
Journal:  Exp Hematol Oncol       Date:  2022-06-03

Review 7.  Autophagy and ncRNAs: Dangerous Liaisons in the Crosstalk between the Tumor and Its Microenvironment.

Authors:  Gracie Wee Ling Eng; Yilong Zheng; Dominic Wei Ting Yap; Andrea York Tiang Teo; Jit Kong Cheong
Journal:  Cancers (Basel)       Date:  2021-12-21       Impact factor: 6.639

8.  A Novel Serum tsRNA for Diagnosis and Prediction of Nephritis in SLE.

Authors:  Ping Yang; Xiaoshan Zhang; Shanshan Chen; Yue Tao; Mingzhe Ning; Yijia Zhu; Jun Liang; Wei Kong; Bo Shi; Zhiyang Li; Han Shen; Yanbo Wang
Journal:  Front Immunol       Date:  2021-11-11       Impact factor: 7.561

Review 9.  The Clinical Significance of Transfer RNAs Present in Extracellular Vesicles.

Authors:  Daniel S K Liu; Qi Zhi Clayton Yang; Mohammad Asim; Jonathan Krell; Adam E Frampton
Journal:  Int J Mol Sci       Date:  2022-03-28       Impact factor: 5.923

10.  tRF-19-W4PU732S promotes breast cancer cell malignant activity by targeting inhibition of RPL27A (ribosomal protein-L27A).

Authors:  Zhengxiang Zhang; Zhiping Liu; WeiDong Zhao; Xiaohan Zhao; Yunxiang Tao
Journal:  Bioengineered       Date:  2022-02       Impact factor: 3.269

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