Literature DB >> 33401729

Flexible Folding: Disulfide-Containing Peptides and Proteins Choose the Pathway Depending on the Environments.

Kenta Arai1, Michio Iwaoka1.   

Abstract

In the last few decades, development of novel experimental techniques, such as new types of disulfide (SS)-forming reagents and genetic and chemical technologies for synthesizing designed artificial proteins, is opening a new realm of the oxidative folding study where peptides and proteins can be folded under physiologically more relevant conditions. In this review, after a brief overview of the historical and physicochemical background of oxidative protein folding study, recently revealed folding pathways of several representative peptides and proteins are summarized, including those having two, three, or four SS bonds in the native state, as well as those with odd Cys residues or consisting of two peptide chains. Comparison of the updated pathways with those reported in the early years has revealed the flexible nature of the protein folding pathways. The significantly different pathways characterized for hen-egg white lysozyme and bovine milk α-lactalbumin, which belong to the same protein superfamily, suggest that the information of protein folding pathways, not only the native folded structure, is encoded in the amino acid sequence. The application of the flexible pathways of peptides and proteins to the engineering of folded three-dimensional structures is an interesting and important issue in the new realm of the current oxidative protein folding study.

Entities:  

Keywords:  neurodegenerative diseases; protein engineering; protein folding; selenopeptides; selenoxide

Year:  2021        PMID: 33401729      PMCID: PMC7794709          DOI: 10.3390/molecules26010195

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  73 in total

1.  The folding pathway of alpha-lactalbumin elucidated by the technique of disulfide scrambling. Isolation of on-pathway and off-pathway intermediates.

Authors:  Jui-Yoa Chang
Journal:  J Biol Chem       Date:  2001-09-17       Impact factor: 5.157

2.  Two new structured intermediates in the oxidative folding of RNase A.

Authors:  E Welker; M Narayan; M J Volles; H A Scheraga
Journal:  FEBS Lett       Date:  1999-11-05       Impact factor: 4.124

3.  Pathway of oxidative folding of alpha-lactalbumin: a model for illustrating the diversity of disulfide folding pathways.

Authors:  Jui-Yoa Chang; Li Li
Journal:  Biochemistry       Date:  2002-07-02       Impact factor: 3.162

4.  Total synthesis of the analgesic conotoxin MrVIB through selenocysteine-assisted folding.

Authors:  Aline Dantas de Araujo; Brid Callaghan; Simon T Nevin; Norelle L Daly; David J Craik; Melissa Moretta; Gene Hopping; Macdonald J Christie; David J Adams; Paul F Alewood
Journal:  Angew Chem Int Ed Engl       Date:  2011-05-31       Impact factor: 15.336

5.  Protein Misfolding Diseases.

Authors:  F Ulrich Hartl
Journal:  Annu Rev Biochem       Date:  2017-04-24       Impact factor: 23.643

6.  Substitution of an Internal Disulfide Bridge with a Diselenide Enhances both Foldability and Stability of Human Insulin.

Authors:  Orit Weil-Ktorza; Nischay Rege; Shifra Lansky; Deborah E Shalev; Gil Shoham; Michael A Weiss; Norman Metanis
Journal:  Chemistry       Date:  2019-05-16       Impact factor: 5.236

7.  Characterization of kinetic and thermodynamic phases in the prefolding process of bovine pancreatic ribonuclease A coupled with fast SS formation and SS reshuffling.

Authors:  Kenta Arai; Fumio Kumakura; Michio Iwaoka
Journal:  Biochemistry       Date:  2010-11-15       Impact factor: 3.162

8.  Shifting the competition between the intramolecular Reshuffling reaction and the direct oxidation reaction during the oxidative folding of kinetically trapped disulfide-insecure intermediates.

Authors:  Mahesh Narayan; Ervin Welker; Celestine Wanjalla; Guoqiang Xu; Harold A Scheraga
Journal:  Biochemistry       Date:  2003-09-16       Impact factor: 3.162

9.  Kinetic and thermodynamic analysis of the conformational folding process of SS-reduced bovine pancreatic ribonuclease A using a selenoxide reagent with high oxidizing ability.

Authors:  Kenta Arai; Fumio Kumakura; Michio Iwaoka
Journal:  FEBS Open Bio       Date:  2012-04-16       Impact factor: 2.693

Review 10.  Revisiting the Formation of a Native Disulfide Bond: Consequences for Protein Regeneration and Beyond.

Authors:  Mahesh Narayan
Journal:  Molecules       Date:  2020-11-16       Impact factor: 4.411

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  1 in total

1.  Survey of the Intermolecular Disulfide Bonds Observed in Protein Crystal Structures Deposited in the Protein Data Bank.

Authors:  Oliviero Carugo
Journal:  Life (Basel)       Date:  2022-06-30
  1 in total

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