Literature DB >> 24763591

Structure-guided transformation of channelrhodopsin into a light-activated chloride channel.

Andre Berndt1, Soo Yeun Lee, Charu Ramakrishnan, Karl Deisseroth.   

Abstract

Using light to silence electrical activity in targeted cells is a major goal of optogenetics. Available optogenetic proteins that directly move ions to achieve silencing are inefficient, pumping only a single ion per photon across the cell membrane rather than allowing many ions per photon to flow through a channel pore. Building on high-resolution crystal-structure analysis, pore vestibule modeling, and structure-guided protein engineering, we designed and characterized a class of channelrhodopsins (originally cation-conducting) converted into chloride-conducting anion channels. These tools enable fast optical inhibition of action potentials and can be engineered to display step-function kinetics for stable inhibition, outlasting light pulses and for orders-of-magnitude-greater light sensitivity of inhibited cells. The resulting family of proteins defines an approach to more physiological, efficient, and sensitive optogenetic inhibition.

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Year:  2014        PMID: 24763591      PMCID: PMC4096039          DOI: 10.1126/science.1252367

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  41 in total

1.  The voltage-dependent proton pumping in bacteriorhodopsin is characterized by optoelectric behavior.

Authors:  S Geibel; T Friedrich; P Ormos; P G Wood; G Nagel; E Bamberg
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels.

Authors:  André Berndt; Philipp Schoenenberger; Joanna Mattis; Kay M Tye; Karl Deisseroth; Peter Hegemann; Thomas G Oertner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-19       Impact factor: 11.205

3.  Protein interactions central to stabilizing the K+ channel selectivity filter in a four-sited configuration for selective K+ permeation.

Authors:  David B Sauer; Weizhong Zeng; Srinivasan Raghunathan; Youxing Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-20       Impact factor: 11.205

4.  Two possible roles of bacteriorhodopsin; a comparative study of strains of Halobacterium halobium differing in pigmentation.

Authors:  A Matsuno-Yagi; Y Mukohata
Journal:  Biochem Biophys Res Commun       Date:  1977-09-09       Impact factor: 3.575

5.  Rhodopsin-like protein from the purple membrane of Halobacterium halobium.

Authors:  D Oesterhelt; W Stoeckenius
Journal:  Nat New Biol       Date:  1971-09-29

6.  Conversion of the ion selectivity of the 5-HT(3a) receptor from cationic to anionic reveals a conserved feature of the ligand-gated ion channel superfamily.

Authors:  M J Gunthorpe; S C Lummis
Journal:  J Biol Chem       Date:  2001-01-03       Impact factor: 5.157

7.  Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii.

Authors:  Oleg A Sineshchekov; Kwang-Hwan Jung; John L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

8.  Optogenetics.

Authors:  Karl Deisseroth
Journal:  Nat Methods       Date:  2010-12-20       Impact factor: 28.547

9.  ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation.

Authors:  John Y Lin; Per Magne Knutsen; Arnaud Muller; David Kleinfeld; Roger Y Tsien
Journal:  Nat Neurosci       Date:  2013-09-01       Impact factor: 24.884

10.  Hilar GABAergic interneuron activity controls spatial learning and memory retrieval.

Authors:  Yaisa Andrews-Zwilling; Anna K Gillespie; Alexxai V Kravitz; Alexandra B Nelson; Nino Devidze; Iris Lo; Seo Yeon Yoon; Nga Bien-Ly; Karen Ring; Daniel Zwilling; Gregory B Potter; John L R Rubenstein; Anatol C Kreitzer; Yadong Huang
Journal:  PLoS One       Date:  2012-07-05       Impact factor: 3.240

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  155 in total

1.  Gating mechanisms of a natural anion channelrhodopsin.

Authors:  Oleg A Sineshchekov; Elena G Govorunova; Hai Li; John L Spudich
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

2.  Optogenetics and the future of neuroscience.

Authors:  Edward S Boyden
Journal:  Nat Neurosci       Date:  2015-09       Impact factor: 24.884

3.  Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity.

Authors:  Andre Berndt; Soo Yeun Lee; Jonas Wietek; Charu Ramakrishnan; Elizabeth E Steinberg; Asim J Rashid; Hoseok Kim; Sungmo Park; Adam Santoro; Paul W Frankland; Shrivats M Iyer; Sally Pak; Sofie Ährlund-Richter; Scott L Delp; Robert C Malenka; Sheena A Josselyn; Marie Carlén; Peter Hegemann; Karl Deisseroth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

4.  Identification of a Natural Green Light Absorbing Chloride Conducting Channelrhodopsin from Proteomonas sulcata.

Authors:  Jonas Wietek; Matthias Broser; Benjamin S Krause; Peter Hegemann
Journal:  J Biol Chem       Date:  2016-01-06       Impact factor: 5.157

Review 5.  The Physiology of Fear: Reconceptualizing the Role of the Central Amygdala in Fear Learning.

Authors:  Orion P Keifer; Robert C Hurt; Kerry J Ressler; Paul J Marvar
Journal:  Physiology (Bethesda)       Date:  2015-09

Review 6.  Optogenetic tools for modulating and probing the epileptic network.

Authors:  Mingrui Zhao; Rose Alleva; Hongtao Ma; Andy G S Daniel; Theodore H Schwartz
Journal:  Epilepsy Res       Date:  2015-06-21       Impact factor: 3.045

Review 7.  Optrodes for combined optogenetics and electrophysiology in live animals.

Authors:  Suzie Dufour; Yves De Koninck
Journal:  Neurophotonics       Date:  2015-07-02       Impact factor: 3.593

8.  Directed evolution of a far-red fluorescent rhodopsin.

Authors:  R Scott McIsaac; Martin K M Engqvist; Timothy Wannier; Adam Z Rosenthal; Lukas Herwig; Nicholas C Flytzanis; Eleonora S Imasheva; Janos K Lanyi; Sergei P Balashov; Viviana Gradinaru; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-25       Impact factor: 11.205

9.  Optogenetic versus Electrical Stimulation of Human Cardiomyocytes: Modeling Insights.

Authors:  John C Williams; Emilia Entcheva
Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

10.  Spatiotemporal control of opioid signaling and behavior.

Authors:  Edward R Siuda; Bryan A Copits; Martin J Schmidt; Madison A Baird; Ream Al-Hasani; William J Planer; Samuel C Funderburk; Jordan G McCall; Robert W Gereau; Michael R Bruchas
Journal:  Neuron       Date:  2015-04-30       Impact factor: 17.173

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