Literature DB >> 33393161

Recent advancements in glycoproteomic studies: Glycopeptide enrichment and derivatization, characterization of glycosylation in SARS CoV2, and interacting glycoproteins.

Ivona Pujić1, Hélène Perreault1.   

Abstract

Proteomics studies allow for the determination of the identity, amount, and interactions of proteins under specific conditions that allow the biological state of an organism to ultimately change. These conditions can be either beneficial or detrimental. Diseases are due to detrimental changes caused by either protein overexpression or underexpression caused by as a result of a mutation or posttranslational modifications (PTM), among other factors. Identification of disease biomarkers through proteomics can be potentially used as clinical information for diagnostics. Common biomarkers to look for include PTM. For example, aberrant glycosylation of proteins is a common marker and will be a focus of interest in this review. A common way to analyze glycoproteins is by glycoproteomics involving mass spectrometry. Due to factors such as micro- and macroheterogeneity which result in a lower abundance of each version of a glycoprotein, it is difficult to obtain meaningful results unless rigorous sample preparation procedures are in place. Microheterogeneity represents the diversity of glycans at a single site, whereas macroheterogeneity depicts glycosylation levels at each site of a protein. Enrichment and derivatization of glycopeptides help to overcome these limitations. Over the time range of 2016 to 2020, several methods have been proposed in the literature and have contributed to drastically improve the outcome of glycosylation analysis, as presented in the sampling surveyed in this review. As a current topic in 2020, glycoproteins carried by pathogens can also cause disease and this is seen with SARS CoV2, causing the COVID-19 pandemic. This review will discuss glycoproteomic studies of the spike glycoprotein and interacting proteins such as the ACE2 receptor.
© 2020 by John Wiley & Sons Ltd.

Entities:  

Keywords:  ACE2 receptor; SARS Cov2; glycoform; glycopeptide; glycoprotein; glycoproteomics; spike glycoprotein

Mesh:

Substances:

Year:  2021        PMID: 33393161     DOI: 10.1002/mas.21679

Source DB:  PubMed          Journal:  Mass Spectrom Rev        ISSN: 0277-7037            Impact factor:   10.946


  8 in total

Review 1.  Methods for quantification of glycopeptides by liquid separation and mass spectrometry.

Authors:  Haidi Yin; Jianhui Zhu
Journal:  Mass Spectrom Rev       Date:  2022-01-31       Impact factor: 9.011

2.  The opportunity cost of automated glycopeptide analysis: case study profiling the SARS-CoV-2 S glycoprotein.

Authors:  Eden P Go; Shijian Zhang; Haitao Ding; John C Kappes; Joseph Sodroski; Heather Desaire
Journal:  Anal Bioanal Chem       Date:  2021-08-27       Impact factor: 4.478

Review 3.  Mass Spectrometry-based Proteomics and Glycoproteomics in COVID-19 Biomarkers Identification: A Mini-review.

Authors:  Li Zhong; Lin Zhu; Zong-Wei Cai
Journal:  J Anal Test       Date:  2021-09-08

Review 4.  Strategies for Proteome-Wide Quantification of Glycosylation Macro- and Micro-Heterogeneity.

Authors:  Pan Fang; Yanlong Ji; Thomas Oellerich; Henning Urlaub; Kuan-Ting Pan
Journal:  Int J Mol Sci       Date:  2022-01-30       Impact factor: 5.923

5.  Comparative N-Glycoproteomics Analysis of Clinical Samples Via Different Mass Spectrometry Dissociation Methods.

Authors:  Wenjuan Zeng; Shanshan Zheng; Tao Su; Jiahan Cheng; Yonghong Mao; Yi Zhong; Yueqiu Liu; Jianhai Chen; Wanjun Zhao; Tianhai Lin; Fang Liu; Guisen Li; Hao Yang; Yong Zhang
Journal:  Front Chem       Date:  2022-02-24       Impact factor: 5.221

6.  Comprehensive Plasma N-Glycoproteome Profiling Based on EThcD-sceHCD-MS/MS.

Authors:  Yonghong Mao; Tao Su; Tianhai Lin; Hao Yang; Yang Zhao; Yong Zhang; Xinhua Dai
Journal:  Front Chem       Date:  2022-06-20       Impact factor: 5.545

7.  Site-specific N-glycosylation characterization of micro monoclonal immunoglobulins based on EThcD-sceHCD-MS/MS.

Authors:  Mengqi Luo; Yonghong Mao; Wenjuan Zeng; Shanshan Zheng; Huixian Li; Juanjuan Hu; Xinfang Xie; Yong Zhang
Journal:  Front Immunol       Date:  2022-09-15       Impact factor: 8.786

8.  N-glycosylation profiles of the SARS-CoV-2 spike D614G mutant and its ancestral protein characterized by advanced mass spectrometry.

Authors:  Dongxia Wang; Bin Zhou; Theodore R Keppel; Maria Solano; Jakub Baudys; Jason Goldstein; M G Finn; Xiaoyu Fan; Asheley P Chapman; Jonathan L Bundy; Adrian R Woolfitt; Sarah H Osman; James L Pirkle; David E Wentworth; John R Barr
Journal:  Sci Rep       Date:  2021-12-07       Impact factor: 4.996

  8 in total

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