Literature DB >> 33392655

An efficient method for building a database of diatom populations for drowning site inference using a deep learning algorithm.

Ji Zhang1, Yuanyuan Zhou1,2, Duarte Nuno Vieira3, Yongjie Cao4, Kaifei Deng1, Qi Cheng5, Yongzheng Zhu6, Jianhua Zhang1, Zhiqiang Qin1, Kaijun Ma7, Yijiu Chen8, Ping Huang9.   

Abstract

Seasonal or monthly databases of the diatom populations in specific bodies of water are needed to infer the drowning site of a drowned body. However, existing diatom testing methods are laborious, time-consuming, and costly and usually require specific expertise. In this study, we developed an artificial intelligence (AI)-based system as a substitute for manual morphological examination capable of identifying and classifying diatoms at the species level. Within two days, the system collected information on diatom profiles in the Huangpu and Suzhou Rivers of Shanghai, China. In an animal experiment, the similarities of diatom profiles between lung tissues and water samples were evaluated through a modified Jensen-Shannon (JS) divergence measure for drowning site inference, reaching a prediction accuracy of 92.31%. Considering its high efficiency and simplicity, our proposed method is believed to be more applicable than existing methods for seasonal or monthly water monitoring of diatom populations from sections of interconnected rivers, which would help police narrow the investigation scope to confirm the identity of an immersed body.

Entities:  

Keywords:  Convolutional neutral network; Deep learning; Diatom; Digital pathology; Drowning; Site of drowning

Year:  2021        PMID: 33392655     DOI: 10.1007/s00414-020-02497-5

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  19 in total

Review 1.  Diatom detection in the diagnosis of death by drowning.

Authors:  J Hürlimann; P Feer; F Elber; K Niederberger; R Dirnhofer; D Wyler
Journal:  Int J Legal Med       Date:  2000       Impact factor: 2.686

2.  Diatom analysis in victim's tissues as an indicator of the site of drowning.

Authors:  B Ludes; M Coste; N North; S Doray; A Tracqui; P Kintz
Journal:  Int J Legal Med       Date:  1999       Impact factor: 2.686

3.  Diagnosis of drowning: Electrolytes and total protein in sphenoid sinus liquid.

Authors:  Akira Hayakawa; Koichi Terazawa; Kotaro Matoba; Kie Horioka; Tatsushige Fukunaga
Journal:  Forensic Sci Int       Date:  2017-02-24       Impact factor: 2.395

4.  Qualitative diatom analysis as a tool to diagnose drowning.

Authors:  A Auer
Journal:  Am J Forensic Med Pathol       Date:  1991-09       Impact factor: 0.921

5.  An inordinate fondness? The number, distributions, and origins of diatom species.

Authors:  David G Mann; Pieter Vanormelingen
Journal:  J Eukaryot Microbiol       Date:  2013-05-27       Impact factor: 3.346

6.  Digital whole-slide image analysis for automated diatom test in forensic cases of drowning using a convolutional neural network algorithm.

Authors:  Yuanyuan Zhou; Ji Zhang; Jiao Huang; Kaifei Deng; Jianhua Zhang; Zhiqiang Qin; Zhenyuan Wang; Xiaofeng Zhang; Ya Tuo; Liqin Chen; Yijiu Chen; Ping Huang
Journal:  Forensic Sci Int       Date:  2019-08-08       Impact factor: 2.395

7.  A valid method to determine the site of drowning.

Authors:  Rafael Carballeira; Duarte N Vieira; Manuel Febrero-Bande; José I Muñoz Barús
Journal:  Int J Legal Med       Date:  2017-11-08       Impact factor: 2.686

8.  HOW MANY SPECIES OF ALGAE ARE THERE?

Authors:  Michael D Guiry
Journal:  J Phycol       Date:  2012-09-20       Impact factor: 2.923

9.  Accurate and reproducible invasive breast cancer detection in whole-slide images: A Deep Learning approach for quantifying tumor extent.

Authors:  Angel Cruz-Roa; Hannah Gilmore; Ajay Basavanhally; Michael Feldman; Shridar Ganesan; Natalie N C Shih; John Tomaszewski; Fabio A González; Anant Madabhushi
Journal:  Sci Rep       Date:  2017-04-18       Impact factor: 4.379

10.  Classification and mutation prediction from non-small cell lung cancer histopathology images using deep learning.

Authors:  Nicolas Coudray; Paolo Santiago Ocampo; Theodore Sakellaropoulos; Navneet Narula; Matija Snuderl; David Fenyö; Andre L Moreira; Narges Razavian; Aristotelis Tsirigos
Journal:  Nat Med       Date:  2018-09-17       Impact factor: 53.440

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  1 in total

1.  An improved automated diatom detection method based on YOLOv5 framework and its preliminary study for taxonomy recognition in the forensic diatom test.

Authors:  Weimin Yu; Qingqing Xiang; Yingchao Hu; Yukun Du; Xiaodong Kang; Dongyun Zheng; He Shi; Quyi Xu; Zhigang Li; Yong Niu; Chao Liu; Jian Zhao
Journal:  Front Microbiol       Date:  2022-08-19       Impact factor: 6.064

  1 in total

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