| Literature DB >> 33391801 |
Ehsan Ullah Mughal1, Masoud Mirzaei2, Amina Sadiq3, Sana Fatima1, Ayesha Naseem1, Nafeesa Naeem1, Nighat Fatima4, Samia Kausar1, Ataf Ali Altaf1,5, Muhammad Naveed Zafar6, Bilal Ahmad Khan7.
Abstract
A series of different substituted terpyridine (tpy)-based ligands have been synthesized by Kröhnke method. Their binding behaviour was evaluated by complexing them with Co(II), Fe(II) and Zn(II) ions, which resulted in interesting coordination compounds with formulae, [Zn(tpy)2]PF6, [Co(tpy)2](PF6)2, [Fe(tpy)2](PF6)2 and interesting spectroscopic properties. Their absorption and emission behaviours in dilute solutions were investigated in order to explain structure-property associations and demonstrate the impact of different aryl substituents on the terpyridine scaffold as well as the role of the metal on the complexes. Photo-luminescence analysis of the complexes in acetonitrile solution revealed a transition from hypsochromic to bathochromic shift. All the compounds displayed remarkable photo-luminescent properties and various maximum emission peaks owing to the different nature of the functional groups. Furthermore, the anti-microbial potential of ligands and complexes was evaluated with docking analyses carried out to investigate the binding affinity of terpyridine-based ligands along with corresponding proteins (shikimate dehydrogenase and penicillin-binding protein) binding sites. To obtain further insight into molecular orbital distributions and spectroscopic properties, density functional theory calculations were performed for representative complexes. The photophysical activity and interactions between chromophore structure and properties were both investigated experimentally as well as theoretically.Entities:
Keywords: anti-microbial activity; density functional theory; fluorescence; molecular docking; structure–activity relationship; terpyridine
Year: 2020 PMID: 33391801 PMCID: PMC7735333 DOI: 10.1098/rsos.201208
Source DB: PubMed Journal: R Soc Open Sci ISSN: 2054-5703 Impact factor: 2.963
Figure 1.Structural representation of terpyridine framework.
Scheme 1.Synthetic routes to the ligands (L) and their complexes (C).
Absorption and emission data of all the synthesized compounds.
| compound code | solvent | excitation wavelength (nm) | transitions | MLCT band | Stokes shift (nm) | ||
|---|---|---|---|---|---|---|---|
| chloroform | 335 | 357, 731 | 325 | π–π* (LC) | 374 | ||
| chloroform | 303 | 344, 443 | 293 | π–π* (LC) | 109 | ||
| chloroform | 243 | 335, 576 | 234 | π–π* (LC) | 241 | ||
| chloroform | 258 | 371, 746, 855 | 248 | π–π* (LC) | 109 | ||
| chloroform | 243 | 359, 727, 861 | 234 | π–π* (LC) | 134 | ||
| chloroform | 250 | 345, 70, 85 | 240 | π–π* (LC) | 15 | ||
| chloroform | 243 | 345, 723, 852 | 234 | π–π* (LC) | 129 | ||
| chloroform | 263 | 361, 723, 849 | 253 | π–π* (LC) | 126 | ||
| chloroform | 257 | 403, 720, 851 | 247 | π–π* (LC) | 131 | ||
| acetonitrile | 348 | 405, 704 | 338 | π–π* (C=C), n–π* (C=N) | 575 (dπ → π*) | 299 | |
| acetonitrile | 324 | 379, 776 | 314 | π–π* (C=C), n–π* (C=N) | 523 (dπ → π*) | 397 | |
| acetonitrile | 337 | 394, 742 | 327 | π–π* (C=C), n–π* (C=N) | 571 (dπ → π*) | 348 | |
| acetonitrile | 253 | 370, 521, 732 | 243 | π–π* (C=C), n–π* (C=N) | 580 (dπ → π*) | 211 | |
| acetonitrile | 300 | 547, 683 | 290 | π–π* (C=C), n–π* (C=N) | 442 (dπ → π*) | 136 | |
| acetonitrile | 334 | 365, 638, 751 | 324 | π–π* (C=C), n–π* (C=N) | 587 (dπ → π*) | 113 | |
| acetonitrile | 438 | 294, 359, 451, 717 | 428 | π–π* (C=C), n–π* (C=N) | 583 (dπ → π*) | 266 | |
| acetonitrile | 318 | 273, 453, 722 | 308 | π–π* (C=C), n–π* (C=N) | 447 (dπ → π*) | 269 | |
| acetonitrile | 447 | 341, 747 | 437 | π–π* (C=C), n–π* (C=N) | 584 (dπ → π*) | 406 | |
| acetonitrile | 296 | 454, 856 | 286 | π–π* (C=C), n–π* (C=N) | 586 (dπ → π*) | 402 | |
| acetonitrile | 296 | 426, 704, 856 | 286 | π–π* (C=C), n–π* (C=N) | 538 (dπ → π*) | 152 | |
| acetonitrile | 346 | 409, 503, 759, 854 | 336 | π–π* (C=C), n–π* (C=N) | 586 (dπ → π*) | 95 | |
| acetonitrile | 297 | 853 | 287 | π–π* (C=C), n–π* (C=N) | 570 (dπ → π*) | 568 | |
| acetonitrile | 295 | 405, 737, 850 | 285 | π–π* (C=C), n–π* (C=N) | 526 (dπ → π*) | 113 | |
| acetonitrile | 296 | 403, 685, 850 | 286 | π–π* (C=C), n–π* (C=N) | 568 (dπ → π*) | 165 | |
| acetonitrile | 293 | 401, 685, 851 | 283 | π–π* (C=C), n–π* (C=N) | 569 (dπ → π*) | 166 | |
| acetonitrile | 295 | 361, 735, 859 | 285 | π–π* (C=C), n–π* (C=N) | 538 (dπ → π*) | 124 | |
| acetonitrile | 296 | 361, 580, 737, 865 | 286 | π–π* (C=C), n–π* (C=N) | 572 (dπ → π*) | 128 | |
| acetonitrile | 296 | 409, 856 | 286 | π–π* (C=C), n–π* (C=N) | 540 (dπ → π*) | 447 | |
| acetonitrile | 299 | 360, 730, 867 | 289 | π–π* (C=C), n–π* (C=N) | 435 (dπ → π*) | 137 | |
| acetonitrile | 296 | 358, 578, 733, 869 | 286 | π–π* (C=C), n–π* (C=N) | 569 (dπ → π*) | 138 | |
| acetonitrile | 357 | 365, 680, 743, 855 | 347 | π–π* (C=C), n–π* (C=N) | 580 (dπ → π*) | 112 | |
| acetonitrile | 344 | 391, 699 | 334 | π–π* (C=C), n–π* (C=N) | 535 (dπ → π*) | 308 | |
| acetonitrile | 338 | 402, 684, 856 | 328 | π–π* (C=C), n–π* (C=N) | 575 (dπ → π*) | 172 | |
| acetonitrile | 297 | 474, 850 | 287 | π–π* (C=C), n–π* (C=N) | 581 (dπ → π*) | 376 | |
| acetonitrile | 299 | 428, 563, 850 | 289 | π–π* (C=C), n–π* (C=N) | 545 (dπ → π*) | 287 | |
| acetonitrile | 297 | 565, 848 | 287 | π–π* (C=C), n–π* (C=N) | 583 (dπ→π*) | 283 |
LC = ligand centred transition.
MLCT = metal to ligand charge transfer transition.
Figure 2.A comparison of emission spectra of Zn complexes of L in solution form.
Figure 4.A comparison of emission spectra of Fe complexes of L in solution state.
Anti-microbial assay (ZOI) of all the synthesized compounds.
| compound number | zones of inhibition (mm) | ||||
|---|---|---|---|---|---|
| anti-bacterial activity | anti-fungal activity | ||||
| 0 | 0 | 14.5 ± 0.7 | 11.8 ± 0.7 | 0 | |
| 15.1 ± 0.7 | 0 | 16.5 ± 0.4 | 12 ± 0.1 | 0 | |
| 0 | 0 | 16.5 ± 0.1 | 0 | 0 | |
| 0 | 0 | 15.5 ± 0.2 | 19.3 ± 0.3 | 14.6 ± 0.1 | |
| 0 | 0 | 17.5 ± 0.3 | 17.3 ± 0.2 | 17.5 ± 0.7 | |
| 14.3 ± 0.3 | 0 | 0 | 17.4 ± 0.5 | 17.5 ± 0.4 | |
| 18.1 ± 0.4 | 0 | 0 | 15.3 ± 0.2 | 0 | |
| 0 | 0 | 0 | 0 | 14.7 ± 0.8 | |
| 0 | 0 | 18.7 ± 0.7 | 0 | 11.6 ± 0.6 | |
| 16.3 ± 0.7 | 16.5 ± 0.7 | 23.7 ± 0.5 | 17.3 ± 0.6 | 0 | |
| 16.5 ± 0.7 | 0 | 20.8 ± 0.5 | 18.9 ± 0.6 | 0 | |
| 16.7 ± 0.1 | 0 | 16.7 ± 0.6 | 11.4 ± 0.5 | 18.7 ± 0.3 | |
| 17.9 ± 0.3 | 18.5 ± 0.7 | 15.4 ± 0.3 | 0 | 0 | |
| 17.2 ± 0.3 | 13.5 ± 0.7 | 15.7 ± 0.3 | 0 | 14.7 ± 0.3 | |
| 17.2 ± 0.3 | 0 | 15.7 ± 0.3 | 0 | 0 | |
| 19.3 ± 0.1 | 12.5 ± 0.4 | 21.7 ± 0.4 | 0 | 14.6 ± 0.6 | |
| 17.3 ± 0.1 | 14.5 ± 0.4 | 20.7 ± 0.4 | 19.5 ± 0.7 | 15.6 ± 0.6 | |
| 0 | 0 | 0 | 0 | 12.6 ± 0.5 | |
| 17.3 ± 0.2 | 15.7 ± 0.5 | 14.8 ± 0.2 | 0 | 0 | |
| 14.2 ± 0.2 | 0 | 13.8 ± 0.3 | 18.8 ± 0.6 | 0 | |
| 11.5 ± 0.4 | 17.5 ± 0.4 | 0 | 12.6 ± 0.6 | 18.3 ± 0.7 | |
| 14.3 ± 0.3 | 15.7 ± 0.3 | 18.8 ± 0.5 | 0 | 15.8 ± 0.8 | |
| 18.2 ± 0.2 | 0 | 19.8 ± 0.3 | 13.8 ± 0.6 | 18.6 ± 0.9 | |
| 0 | 0 | 0 | 0 | 15.7 ± 0.7 | |
| 19.3 ± 0.3 | 16.8 ± 0.5 | 12.8 ± 0.5 | 19.8 ± 0.1 | 18.8 ± 0.6 | |
| 12.2 ± 0.2 | 0 | 0 | 15.8 ± 0.6 | 12.4 ± 0.5 | |
| 14.5 ± 0.4 | 0 | 0 | 0 | 15.3 ± 0.7 | |
| 18.3 ± 0.3 | 15.7 ± 0.3 | 18.8 ± 0.5 | 15.8 ± 0.1 | 0 | |
| 0 | 0 | 16.8 ± 0.3 | 0 | 14.6 ± 0.5 | |
| 18.5 ± 0.4 | 0 | 0 | 21.6 ± 0.6 | 0 | |
| 14.3 ± 0.3 | 15.7 ± 0.3 | 14.8 ± 0.5 | 15.8 ± 0.1 | 16.8 ± 0.6 | |
| 14.2 ± 0.2 | 0 | 19.8 ± 0.3 | 15.8 ± 0.6 | 10.6 ± 0.5 | |
| 18.5 ± 0.4 | 0 | 0 | 21.6 ± 0.6 | 15.3 ± 0.7 | |
| 19.3 ± 0.3 | 14.7 ± 0.3 | 17.8 ± 0.5 | 15.8 ± 0.1 | 12.8 ± 0.6 | |
| 16.2 ± 0.2 | 0 | 15.8 ± 0.3 | 18.8 ± 0.6 | 0 | |
| 17.5 ± 0.4 | 18.7 ± 0.3 | 0 | 0 | 11.3 ± 0.7 | |
| negative (DMSO) | — | — | — | — | — |
| standard (cefixime) | 28.7 ± 0.3 | 27.5 ± 0.7 | 30.5 ± 0.3 | — | — |
| standard (clotrimazole) | — | — | — | 28.9 ± 0.8 | 25.6 ± 0.6 |
Figure 5.Structure–activity relationship of the synthesized terpyridine-based ligands and metal complexes.
Figure 6.Three-dimensional docking pose of (a) shikimate dehydrogenase and (b) penicillin-binding protein having active binding sites.
Figure 7.Molecular modelling views and information of ligand L association with atoms of shikimate dehydrogenase as the target (PDB ID: 3DON) performed by MOE software. (a) Three-dimensional interaction and (b) two-dimensional interaction with amino acid residues.
Energy values obtained by docking analysis of some of the synthesized ligands (L) against shikimate dehydrogenase and penicillin-binding protein target molecule.
| compound no. | shikimate dehydrogenase lowest binding energy ΔG (kcal mol−1) | penicillin-binding protein lowest binding energy ΔG (kcal mol−1) |
|---|---|---|
| −5.970 | −5.743 | |
| −5.421 | −5.283 | |
| −5.413 | −5.237 | |
| −3.749 | −4.437 | |
| −5.050 | −4.859 | |
| −4.849 | −4.664 | |
| −4.557 | −4.590 | |
| −4.834 | −4.010 | |
| −4.783 | −4.964 | |
| standard | −5.010 (NSC) | −8.180 (gentamycin) |
Figure 8.Molecular modelling views (best pose has been shown) and information of ligand L interaction with atoms of penicillin-binding protein as the target (PDB ID: 1VQQ) performed by MOE software. (a) Three-dimensional interaction and (b) two-dimensional interaction with amino acid residues.
DFT-B3LYP* (DZ) calculated values of ELUMO, EHOMO and EHOMO-ELUMO gap (ΔE) of representative complexes experimental λmax.
| compound code | ELUMO (Hartee) | EHOMO (Hartee) | ELUMO-EHOMO gap ΔE (Hartee) | |
|---|---|---|---|---|
| −0.1505 | −0.2121 | 0.0616 | 570 | |
| −0.1088 | −0.1235 | 0.0147 | 526 | |
| −0.2257 | −0.2918 | 0.0661 | 568 | |
| −0.1709 | −0.2136 | 0.0427 | 580 | |
| −0.1244 | −0.1253 | 0.0009 | 535 | |
| −0.0881 | −0.0957 | 0.0076 | 575 |
Figure 9.DFT-B3LYP* (DZ) calculated frontier molecular orbitals (FMOs) of (a) C and (b) C.
Figure 10.Experimental and DFT-B3LYP* (DZ) calculated UV-Vis spectra of representative metal complexes of ligands L5 and L8: (a) C and (b) C.
The DFT-B3LYP* (DZ) calculated chemical reactivity parameters of representative complexes.
| compound code | electron affinity | ionization potential | electro-negativity | electro-philicity | chemical potential | global hardness | global softness |
|---|---|---|---|---|---|---|---|
| 0.1505 | 0.2121 | 0.1813 | 0.533599 | −0.1813 | 0.0308 | 16.23377 | |
| 0.1088 | 0.1235 | 0.11615 | 0.917743 | −0.11615 | 0.00735 | 68.02721 | |
| 0.2257 | 0.2918 | 0.25875 | 1.012883 | −0.25875 | 0.03305 | 15.12859 | |
| 0.1709 | 0.2136 | 0.19225 | 0.865575 | −0.19225 | 0.02135 | 23.4192 | |
| 0.1244 | 0.1253 | 0.12485 | 1.731947 | −0.12485 | 0.0045 | 111.111 | |
| 0.0881 | 0.0957 | 0.0919 | 1.111264 | −0.0919 | 0.0038 | 131.5789 |