Literature DB >> 33388636

Protein folding stability and binding interactions through the lens of evolution: a dynamical perspective.

Tushar Modi1, Paul Campitelli1, Ismail Can Kazan1, Sefika Banu Ozkan2.   

Abstract

While the function of a protein depends heavily on its ability to fold into a correct 3D structure, billions of years of evolution have tailored proteins from highly stable objects to flexible molecules as they adapted to environmental changes. Nature maintains the fine balance of protein folding and stability while still evolving towards new function through generations of fine-tuning necessary interactions with other proteins and small molecules. Here we focus on recent computational and experimental studies that shed light onto how evolution molds protein folding and the functional landscape from a conformational dynamics' perspective. Particularly, we explore the importance of dynamic allostery throughout protein evolution and discuss how the protein anisotropic network can give rise to allosteric and epistatic interactions.
Copyright © 2020. Published by Elsevier Ltd.

Year:  2020        PMID: 33388636     DOI: 10.1016/j.sbi.2020.11.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  7 in total

Review 1.  Bioprospecting of microbial enzymes: current trends in industry and healthcare.

Authors:  Eswar Rao Tatta; Madangchanok Imchen; Jamseel Moopantakath; Ranjith Kumavath
Journal:  Appl Microbiol Biotechnol       Date:  2022-03-07       Impact factor: 4.813

2.  Odd one out? Functional tuning of Zymomonas mobilis pyruvate kinase is narrower than its allosteric, human counterpart.

Authors:  Braelyn M Page; Tyler A Martin; Collette L Wright; Lauren A Fenton; Maite T Villar; Qingling Tang; Antonio Artigues; Audrey Lamb; Aron W Fenton; Liskin Swint-Kruse
Journal:  Protein Sci       Date:  2022-07       Impact factor: 6.993

Review 3.  Mechanisms of protein evolution.

Authors:  Vijay Jayaraman; Saacnicteh Toledo-Patiño; Lianet Noda-García; Paola Laurino
Journal:  Protein Sci       Date:  2022-07       Impact factor: 6.993

4.  The roles of highly conserved, non-catalytic residues in class A β-lactamases.

Authors:  Aleksandra Chikunova; Marcellus Ubbink
Journal:  Protein Sci       Date:  2022-06       Impact factor: 6.993

5.  Can sequence-specific and dynamics-based metrics allow us to decipher the function in IDP sequences?

Authors:  S Banu Ozkan
Journal:  Biophys J       Date:  2021-04-16       Impact factor: 4.033

6.  Protein Conformational Space at the Edge of Allostery: Turning a Nonallosteric Malate Dehydrogenase into an "Allosterized" Enzyme Using Evolution-Guided Punctual Mutations.

Authors:  Antonio Iorio; Céline Brochier-Armanet; Caroline Mas; Fabio Sterpone; Dominique Madern
Journal:  Mol Biol Evol       Date:  2022-09-01       Impact factor: 8.800

7.  The Role of Rigid Residues in Modulating TEM-1 β-Lactamase Function and Thermostability.

Authors:  Bethany Kolbaba-Kartchner; I Can Kazan; Jeremy H Mills; S Banu Ozkan
Journal:  Int J Mol Sci       Date:  2021-03-12       Impact factor: 5.923

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.