Literature DB >> 33383698

Holistic Metabolomic Laboratory-Developed Test (LDT): Development and Use for the Diagnosis of Early-Stage Parkinson's Disease.

Petr G Lokhov1, Dmitry L Maslov1, Steven Lichtenberg2, Oxana P Trifonova1, Elena E Balashova1.   

Abstract

A laboratory-developed test (LDT) is a type of in vitro diagnostic test that is developed and used within a single laboratory. The holistic metabolomic LDT integrating the currently available data on human metabolic pathways, changes in the concentrations of low-molecular-weight compounds in the human blood during diseases and other conditions, and their prevalent location in the body was developed. That is, the LDT uses all of the accumulated metabolic data relevant for disease diagnosis and high-resolution mass spectrometry with data processing by in-house software. In this study, the LDT was applied to diagnose early-stage Parkinson's disease (PD), which currently lacks available laboratory tests. The use of the LDT for blood plasma samples confirmed its ability for such diagnostics with 73% accuracy. The diagnosis was based on relevant data, such as the detection of overrepresented metabolite sets associated with PD and other neurodegenerative diseases. Additionally, the ability of the LDT to detect normal composition of low-molecular-weight compounds in blood was demonstrated, thus providing a definition of healthy at the molecular level. This LDT approach as a screening tool can be used for the further widespread testing for other diseases, since 'omics' tests, to which the metabolomic LDT belongs, cover a variety of them.

Entities:  

Keywords:  Parkinson’s disease; biologic context; blood plasma; diagnostics; laboratory-developed test; mass spectrometry; metabolite identification; metabolite sets; metabolomics; overrepresentation analysis; putatively annotated metabolites

Year:  2020        PMID: 33383698      PMCID: PMC7824177          DOI: 10.3390/metabo11010014

Source DB:  PubMed          Journal:  Metabolites        ISSN: 2218-1989


  40 in total

1.  Mass spectrometric signatures of the blood plasma metabolome for disease diagnostics.

Authors:  Petr G Lokhov; Elena E Balashova; Anna A Voskresenskaya; Oxana P Trifonova; Dmitry L Maslov; Alexander I Archakov
Journal:  Biomed Rep       Date:  2015-11-24

2.  Laboratory-developed test for detection of acute Clostridium difficile infections with the capacity for quantitative sample normalization.

Authors:  Ivan Brukner; Shaun Eintracht; Vincenzo Forgetta; Andreas I Papadakis; Alan Spatz; Matthew Oughton
Journal:  Diagn Microbiol Infect Dis       Date:  2019-05-10       Impact factor: 2.803

Review 3.  Metabolomics in the clinic: A review of the shared and unique features of untargeted metabolomics for clinical research and clinical testing.

Authors:  Adam D Kennedy; Bryan M Wittmann; Anne M Evans; Luke A D Miller; Douglas R Toal; Shaun Lonergan; Sarah H Elsea; Kirk L Pappan
Journal:  J Mass Spectrom       Date:  2018-11       Impact factor: 1.982

4.  Sex differences in striatal dopamine release in young adults after oral alcohol challenge: a positron emission tomography imaging study with [¹¹C]raclopride.

Authors:  Nina B L Urban; Lawrence S Kegeles; Mark Slifstein; Xiaoyan Xu; Diana Martinez; Ehab Sakr; Felipe Castillo; Tiffany Moadel; Stephanie S O'Malley; John H Krystal; Anissa Abi-Dargham
Journal:  Biol Psychiatry       Date:  2010-08-03       Impact factor: 13.382

5.  PD-L1 expression in non-small cell lung cancer: evaluation of the diagnostic accuracy of a laboratory-developed test using clone E1L3N in comparison with 22C3 and SP263 assays.

Authors:  Enrico Munari; Giuseppe Zamboni; Gianluigi Lunardi; Marcella Marconi; Matteo Brunelli; Guido Martignoni; George J Netto; Linda Quatrini; Paola Vacca; Lorenzo Moretta; Giuseppe Bogina
Journal:  Hum Pathol       Date:  2019-05-21       Impact factor: 3.466

6.  NMR Metabolomics Analysis of Parkinson's Disease.

Authors:  Shulei Lei; Robert Powers
Journal:  Curr Metabolomics       Date:  2013

7.  Anaplastic lymphoma kinase 5A4 immunohistochemistry as a diagnostic assay in lung cancer: A Canadian reference testing center's results in population-based reflex testing.

Authors:  Pierre O Fiset; Catherine Labbé; Kelvin Young; Kenneth J Craddock; Adam C Smith; Jeffrey Tanguay; Melania Pintilie; Ri Wang; Emina Torlakovic; Carol Cheung; Gilda da Cunha Santos; Hyang-Mi Ko; Scott L Boerner; David M Hwang; Natasha B Leighl; Ming-Sound Tsao
Journal:  Cancer       Date:  2019-08-07       Impact factor: 6.860

8.  Blood plasma metabolites and the risk of developing lung cancer in Russia.

Authors:  Petr G Lokhov; Oxana P Trifonova; Dmitry L Maslov; Alexander I Archakov
Journal:  Eur J Cancer Prev       Date:  2013-07       Impact factor: 2.497

9.  Label-free data standardization for clinical metabolomics.

Authors:  Petr G Lokhov; Dmitri L Maslov; Oleg N Kharibin; Elena E Balashova; Alexander I Archakov
Journal:  BioData Min       Date:  2017-02-28       Impact factor: 2.522

10.  Diagnosis of Parkinson's Disease by A Metabolomics-Based Laboratory-Developed Test (LDT).

Authors:  Petr G Lokhov; Oxana P Trifonova; Dmitry L Maslov; Steven Lichtenberg; Elena E Balashova
Journal:  Diagnostics (Basel)       Date:  2020-05-21
View more
  1 in total

Review 1.  Metabolomic Laboratory-Developed Tests: Current Status and Perspectives.

Authors:  Steven Lichtenberg; Oxana P Trifonova; Dmitry L Maslov; Elena E Balashova; Petr G Lokhov
Journal:  Metabolites       Date:  2021-06-26
  1 in total

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