Literature DB >> 33373034

Dynamic parameter estimation and prediction over consecutive scales, based on moving horizon estimation: applied to an industrial cell culture seed train.

Tanja Hernández Rodríguez1, Christoph Posch2, Ralf Pörtner3, Björn Frahm4.   

Abstract

Bioprocess modeling has become a useful tool for prediction of the process future with the aim to deduce operating decisions (e.g. transfer or feeds). Due to variabilities, which often occur between and within batches, updating (re-estimation) of model parameters is required at certain time intervals (dynamic parameter estimation) to obtain reliable predictions. This can be challenging in the presence of low sampling frequencies (e.g. every 24 h), different consecutive scales and large measurement errors, as in the case of cell culture seed trains. This contribution presents an iterative learning workflow which generates and incorporates knowledge concerning cell growth during the process by using a moving horizon estimation (MHE) approach for updating of model parameters. This estimation technique is compared to a classical weighted least squares estimation (WLSE) approach in the context of model updating over three consecutive cultivation scales (40-2160 L) of an industrial cell culture seed train. Both techniques were investigated regarding robustness concerning the aforementioned challenges and the required amount of experimental data (estimation horizon). It is shown how the proposed MHE can deal with the aforementioned difficulties by the integration of prior knowledge, even if only data at two sampling points are available, outperforming the classical WLSE approach. This workflow allows to adequately integrate current process behavior into the model and can therefore be a suitable component of a digital twin.

Entities:  

Keywords:  Bioprocess; Cell cultures; Dynamic parameter estimation; Moving horizon estimation; Prior knowledge

Mesh:

Substances:

Year:  2020        PMID: 33373034      PMCID: PMC7997845          DOI: 10.1007/s00449-020-02488-1

Source DB:  PubMed          Journal:  Bioprocess Biosyst Eng        ISSN: 1615-7591            Impact factor:   3.210


  26 in total

1.  Seed train optimization for cell culture.

Authors:  Björn Frahm
Journal:  Methods Mol Biol       Date:  2014

2.  Model-based optimization of temperature and pH shift to increase volumetric productivity of a Chinese hamster ovary fed-batch process.

Authors:  Katrin Paul; Vignesh Rajamanickam; Christoph Herwig
Journal:  J Biosci Bioeng       Date:  2019-07-02       Impact factor: 2.894

3.  Model-assisted Design of Experiments as a concept for knowledge-based bioprocess development.

Authors:  Johannes Möller; Kim B Kuchemüller; Tobias Steinmetz; Kirsten S Koopmann; Ralf Pörtner
Journal:  Bioprocess Biosyst Eng       Date:  2019-02-26       Impact factor: 3.210

Review 4.  Quality by control: Towards model predictive control of mammalian cell culture bioprocesses.

Authors:  Wolfgang Sommeregger; Bernhard Sissolak; Kulwant Kandra; Moritz von Stosch; Martin Mayer; Gerald Striedner
Journal:  Biotechnol J       Date:  2017-03-31       Impact factor: 4.677

5.  Bioprocess optimization under uncertainty using ensemble modeling.

Authors:  Yang Liu; Rudiyanto Gunawan
Journal:  J Biotechnol       Date:  2017-01-27       Impact factor: 3.307

Review 6.  A review of control strategies for manipulating the feed rate in fed-batch fermentation processes.

Authors:  Lisa Mears; Stuart M Stocks; Gürkan Sin; Krist V Gernaey
Journal:  J Biotechnol       Date:  2017-02-05       Impact factor: 3.307

7.  Estimation of Process Model Parameters.

Authors:  Sahar Deppe; Björn Frahm; Volker C Hass; Tanja Hernández Rodríguez; Kim B Kuchemüller; Johannes Möller; Ralf Pörtner
Journal:  Methods Mol Biol       Date:  2020

8.  Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control.

Authors:  Ana P Teixeira; Carlos Alves; Paula M Alves; Manuel J T Carrondo; Rui Oliveira
Journal:  BMC Bioinformatics       Date:  2007-01-29       Impact factor: 3.169

9.  Estimating kinetic mechanisms with prior knowledge II: Behavioral constraints and numerical tests.

Authors:  Marco A Navarro; Autoosa Salari; Mirela Milescu; Lorin S Milescu
Journal:  J Gen Physiol       Date:  2018-01-10       Impact factor: 4.086

10.  Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach.

Authors:  Derek C Manheim; Russell L Detwiler
Journal:  MethodsX       Date:  2019-06-07
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  1 in total

1.  Dynamic parameter estimation and prediction over consecutive scales, based on moving horizon estimation: applied to an industrial cell culture seed train.

Authors:  Tanja Hernández Rodríguez; Christoph Posch; Ralf Pörtner; Björn Frahm
Journal:  Bioprocess Biosyst Eng       Date:  2020-12-29       Impact factor: 3.210

  1 in total

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