Literature DB >> 33372191

Superspreading in early transmissions of COVID-19 in Indonesia.

Agus Hasan1, Hadi Susanto2,3, Muhammad Firmansyah Kasim4, Nuning Nuraini5, Bony Lestari6, Dessy Triany7, Widyastuti Widyastuti8.   

Abstract

This paper presents a study of early epidemiological assessment of COVID-19 transmission dynamics in Indonesia. The aim is to quantify heterogeneity in the numbers of secondary infections. To this end, we estimate the basic reproduction number [Formula: see text] and the overdispersion parameter [Formula: see text] at two regions in Indonesia: Jakarta-Depok and Batam. The method to estimate [Formula: see text] is based on a sequential Bayesian method, while the parameter [Formula: see text] is estimated by fitting the secondary case data with a negative binomial distribution. Based on the first 1288 confirmed cases collected from both regions, we find a high degree of individual-level variation in the transmission. The basic reproduction number [Formula: see text] is estimated at 6.79 and 2.47, while the overdispersion parameter [Formula: see text] of a negative-binomial distribution is estimated at 0.06 and 0.2 for Jakarta-Depok and Batam, respectively. This suggests that superspreading events played a key role in the early stage of the outbreak, i.e., a small number of infected individuals are responsible for large numbers of COVID-19 transmission. This finding can be used to determine effective public measures, such as rapid isolation and identification, which are critical since delay of diagnosis is the most common cause of superspreading events.

Entities:  

Year:  2020        PMID: 33372191      PMCID: PMC7769976          DOI: 10.1038/s41598-020-79352-5

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  4 in total

1.  Clustering and superspreading potential of SARS-CoV-2 infections in Hong Kong.

Authors:  Dillon C Adam; Peng Wu; Jessica Y Wong; Eric H Y Lau; Tim K Tsang; Simon Cauchemez; Gabriel M Leung; Benjamin J Cowling
Journal:  Nat Med       Date:  2020-09-17       Impact factor: 53.440

2.  Maximum likelihood estimation of the negative binomial dispersion parameter for highly overdispersed data, with applications to infectious diseases.

Authors:  James O Lloyd-Smith
Journal:  PLoS One       Date:  2007-02-14       Impact factor: 3.240

3.  Environmental pollution and COVID-19 outbreak: insights from Germany.

Authors:  Muhammad Farhan Bashir; Maroua Benghoul; Umar Numan; Awais Shakoor; Bushra Komal; Muhammad Adnan Bashir; Madiha Bashir; Duojiao Tan
Journal:  Air Qual Atmos Health       Date:  2020-08-03       Impact factor: 5.804

4.  Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks.

Authors:  Akira Endo; Quentin J Leclerc; Gwenan M Knight; Graham F Medley; Katherine E Atkins; Sebastian Funk; Adam J Kucharski
Journal:  Wellcome Open Res       Date:  2021-03-31
  4 in total
  13 in total

1.  A compartmental epidemic model incorporating probable cases to model COVID-19 outbreak in regions with limited testing capacity.

Authors:  A Hasan; Y Nasution
Journal:  ISA Trans       Date:  2021-01-20       Impact factor: 5.911

2.  Superspreading of SARS-CoV-2 in the USA.

Authors:  Calvin Pozderac; Brian Skinner
Journal:  PLoS One       Date:  2021-03-25       Impact factor: 3.240

3.  Heterogeneity matters: Contact structure and individual variation shape epidemic dynamics.

Authors:  Gerrit Großmann; Michael Backenköhler; Verena Wolf
Journal:  PLoS One       Date:  2021-07-20       Impact factor: 3.240

Review 4.  Superspreading and heterogeneity in transmission of SARS, MERS, and COVID-19: A systematic review.

Authors:  Jingxuan Wang; Xiao Chen; Zihao Guo; Shi Zhao; Ziyue Huang; Zian Zhuang; Eliza Lai-Yi Wong; Benny Chung-Ying Zee; Marc Ka Chun Chong; Maggie Haitian Wang; Eng Kiong Yeoh
Journal:  Comput Struct Biotechnol J       Date:  2021-09-01       Impact factor: 7.271

5.  Preventing COVID-19 outbreaks through surveillance testing in healthcare facilities: a modelling study.

Authors:  Tim Litwin; Jens Timmer; Mathias Berger; Andreas Wahl-Kordon; Matthias J Müller; Clemens Kreutz
Journal:  BMC Infect Dis       Date:  2022-01-29       Impact factor: 3.090

6.  Information Flow and Data Gaps in COVID-19 Recording and Reporting at National and Provincial Levels in Indonesia.

Authors:  Diana Barsasella; Arief Tarmansyah Iman; Fery Fadly; Mohy Uddin; Arshad Mohammed; Tazeem Shaik; Hermawan Saputra; Shwetambara Malwade; Eshita Dhar; Jitendra Jonnagaddala; Shabbir Syed-Abdul
Journal:  Healthcare (Basel)       Date:  2022-01-20

7.  Reconstruction of the transmission dynamics of the first COVID-19 epidemic wave in Thailand.

Authors:  Chaiwat Wilasang; Natcha C Jitsuk; Chayanin Sararat; Charin Modchang
Journal:  Sci Rep       Date:  2022-02-07       Impact factor: 4.379

8.  Listening to bluetooth beacons for epidemic risk mitigation.

Authors:  Gilles Barthe; Roberta De Viti; Peter Druschel; Deepak Garg; Manuel Gomez-Rodriguez; Pierfrancesco Ingo; Heiner Kremer; Matthew Lentz; Lars Lorch; Aastha Mehta; Bernhard Schölkopf
Journal:  Sci Rep       Date:  2022-04-01       Impact factor: 4.379

9.  Superspreading quantified from bursty epidemic trajectories.

Authors:  Julius B Kirkegaard; Kim Sneppen
Journal:  Sci Rep       Date:  2021-12-16       Impact factor: 4.379

10.  Real-time pandemic surveillance using hospital admissions and mobility data.

Authors:  Spencer J Fox; Michael Lachmann; Mauricio Tec; Remy Pasco; Spencer Woody; Zhanwei Du; Xutong Wang; Tanvi A Ingle; Emily Javan; Maytal Dahan; Kelly Gaither; Mark E Escott; Stephen I Adler; S Claiborne Johnston; James G Scott; Lauren Ancel Meyers
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-15       Impact factor: 12.779

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.