Literature DB >> 34283842

Heterogeneity matters: Contact structure and individual variation shape epidemic dynamics.

Gerrit Großmann1, Michael Backenköhler1, Verena Wolf1.   

Abstract

In the recent COVID-19 pandemic, mathematical modeling constitutes an important tool to evaluate the prospective effectiveness of non-pharmaceutical interventions (NPIs) and to guide policy-making. Most research is, however, centered around characterizing the epidemic based on point estimates like the average infectiousness or the average number of contacts. In this work, we use stochastic simulations to investigate the consequences of a population's heterogeneity regarding connectivity and individual viral load levels. Therefore, we translate a COVID-19 ODE model to a stochastic multi-agent system. We use contact networks to model complex interaction structures and a probabilistic infection rate to model individual viral load variation. We observe a large dependency of the dispersion and dynamical evolution on the population's heterogeneity that is not adequately captured by point estimates, for instance, used in ODE models. In particular, models that assume the same clinical and transmission parameters may lead to different conclusions, depending on different types of heterogeneity in the population. For instance, the existence of hubs in the contact network leads to an initial increase of dispersion and the effective reproduction number, but to a lower herd immunity threshold (HIT) compared to homogeneous populations or a population where the heterogeneity stems solely from individual infectivity variations.

Entities:  

Year:  2021        PMID: 34283842     DOI: 10.1371/journal.pone.0250050

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  49 in total

1.  Branching process models for surveillance of infectious diseases controlled by mass vaccination.

Authors:  C P Farrington; M N Kanaan; N J Gay
Journal:  Biostatistics       Date:  2003-04       Impact factor: 5.899

2.  Analysis of a stochastic SIR epidemic on a random network incorporating household structure.

Authors:  Frank Ball; David Sirl; Pieter Trapman
Journal:  Math Biosci       Date:  2009-12-22       Impact factor: 2.144

3.  A new SAIR model on complex networks for analysing the 2019 novel coronavirus (COVID-19).

Authors:  Congying Liu; Xiaoqun Wu; Riuwu Niu; Xiuqi Wu; Ruguo Fan
Journal:  Nonlinear Dyn       Date:  2020-06-15       Impact factor: 5.022

4.  Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China.

Authors:  Akira Endo; Sam Abbott; Adam J Kucharski; Sebastian Funk
Journal:  Wellcome Open Res       Date:  2020-07-10

5.  Modeling the spread of COVID-19 in Germany: Early assessment and possible scenarios.

Authors:  Maria Vittoria Barbarossa; Jan Fuhrmann; Jan H Meinke; Stefan Krieg; Hridya Vinod Varma; Noemi Castelletti; Thomas Lippert
Journal:  PLoS One       Date:  2020-09-04       Impact factor: 3.240

6.  Reporting, Epidemic Growth, and Reproduction Numbers for the 2019 Novel Coronavirus (2019-nCoV) Epidemic.

Authors:  Ashleigh R Tuite; David N Fisman
Journal:  Ann Intern Med       Date:  2020-02-05       Impact factor: 25.391

7.  Superspreading events in the transmission dynamics of SARS-CoV-2: Opportunities for interventions and control.

Authors:  Benjamin M Althouse; Edward A Wenger; Joel C Miller; Samuel V Scarpino; Antoine Allard; Laurent Hébert-Dufresne; Hao Hu
Journal:  PLoS Biol       Date:  2020-11-12       Impact factor: 8.029

8.  The effect of control strategies to reduce social mixing on outcomes of the COVID-19 epidemic in Wuhan, China: a modelling study.

Authors:  Kiesha Prem; Yang Liu; Timothy W Russell; Adam J Kucharski; Rosalind M Eggo; Nicholas Davies; Mark Jit; Petra Klepac
Journal:  Lancet Public Health       Date:  2020-03-25

9.  A social network model of COVID-19.

Authors:  Alexander Karaivanov
Journal:  PLoS One       Date:  2020-10-29       Impact factor: 3.240

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  1 in total

1.  Inference in epidemiological agent-based models using ensemble-based data assimilation.

Authors:  Tadeo Javier Cocucci; Manuel Pulido; Juan Pablo Aparicio; Juan Ruíz; Mario Ignacio Simoy; Santiago Rosa
Journal:  PLoS One       Date:  2022-03-04       Impact factor: 3.240

  1 in total

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