| Literature DB >> 33369256 |
Elenor J Kerr1,2, Jonathan Malo2, Kaitlyn Vette3, Graeme R Nimmo4, Stephen B Lambert1,2.
Abstract
BACKGROUND: Inter-seasonal influenza cases have been increasing in Australia. Studies of influenza seasonality typically focus on seasonal transmission in temperate regions, leaving our understanding of inter-seasonal epidemiology limited. We aimed to improve understanding of influenza epidemiology during inter-seasonal periods across climate zones, and explored influenza intensity and strain dominance patterns over time.Entities:
Keywords: Australia; epidemiology; human; influenza; inter-seasonality; seasons; surveillance
Year: 2020 PMID: 33369256 PMCID: PMC8051720 DOI: 10.1111/irv.12828
Source DB: PubMed Journal: Influenza Other Respir Viruses ISSN: 1750-2640 Impact factor: 4.380
Inter‐seasonal laboratory‐confirmed influenza notifications, influenza testing and proportion positive inter‐seasonal to seasonal ratio, Queensland 2009/10 to 2018/19
| Characteristic | Notifications | Tests | Proportion positive (%) | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| IS | S | Ratio | IS | S | Ratio | IS | S | Ratio | ||
| Total | 36 351 | 190 332 | 0.19 | 198 137 | 267 071 | 0.74 | 06.3 | 18.2 | 0.35 | |
| Age group (y) | ||||||||||
| <5 | 3066 | 21 891 | 0.14 | 68 144 | 73 084 | 0.93 | 02.3 | 11.8 | 0.20 | |
| 5‐<10 | 2825 | 23 339 | 0.12 | 12 468 | 18 004 | 0.69 | 07.0 | 24.9 | 0.28 | |
| 10‐<20 | 3834 | 28 699 | 0.13 | 9394 | 13 746 | 0.68 | 10.8 | 30.1 | 0.36 | |
| 20‐<30 | 3821 | 20 366 | 0.19 | 10 529 | 16 113 | 0.65 | 11.6 | 27.3 | 0.43 | |
| 30‐<40 | 4343 | 22 990 | 0.19 | 11 048 | 16 448 | 0.67 | 10.6 | 24.7 | 0.43 | |
| 40‐<50 | 4176 | 18 964 | 0.22 | 12 214 | 17 245 | 0.71 | 09.4 | 19.8 | 0.48 | |
| 50‐<60 | 4557 | 16 616 | 0.27 | 16 365 | 23 109 | 0.71 | 08.7 | 17.7 | 0.49 | |
| 60‐<65 | 2187 | 7866 | 0.28 | 9940 | 13 819 | 0.72 | 07.8 | 17.4 | 0.45 | |
| ≥65 | 7242 | 29 601 | 0.24 | 48 035 | 75 503 | 0.64 | 06.9 | 17.3 | 0.40 | |
| Sex | ||||||||||
| Female | 19 641 | 102 662 | 0.19 | 95 148 | 133 092 | 0.71 | 06.8 | 19.0 | 0.36 | |
| Male | 16 710 | 87 670 | 0.19 | 102 989 | 133 092 | 0.77 | 05.9 | 17.4 | 0.34 | |
| Region | ||||||||||
| Tropical | 9637 | 19 912 | 0.48 | 39 649 | 42 351 | 0.94 | 11.4 | 18.2 | 0.63 | |
| Central | 12 866 | 75 518 | 0.17 | 70 287 | 101 176 | 0.70 | 05.3 | 18.1 | 0.29 | |
| Southern | 13 848 | 94 902 | 0.15 | 82 505 | 116 304 | 0.71 | 04.7 | 18.2 | 0.26 | |
| Strain type | ||||||||||
| Influenza A (all) | 29 608 | 134 972 | 0.22 | |||||||
| A H1 | 3288 | 7268 | 0.45 | |||||||
| A H3 | 3915 | 10 380 | 0.38 | |||||||
| Untyped | 22 405 | 117 324 | 0.19 | |||||||
| Influenza B (all) | 6740 | 55 354 | 0.12 | |||||||
| Yamagata | 205 | 300 | 0.68 | |||||||
| Victoria | 167 | 642 | 0.26 | |||||||
| Untyped | 6368 | 54 412 | 0.12 | |||||||
Abbreviations: IS, Inter‐seasonal period (ISO week 45‐21); S, Seasonal period (ISO week 22‐44).
Excludes the 2009 pandemic season.
Ratio of inter‐seasonal to seasonal values.
Inter‐seasonal laboratory‐confirmed influenza notifications, testing and proportion positive by period, Queensland 2009/10 to 2018/19
| Inter‐seasonal period | Notifications | Tests | Proportion positive | ||
|---|---|---|---|---|---|
| N | Weekly median (IQR) | N | Weekly median (IQR) | ||
| 2009/10 | 71 | 02 (01‐03) | 9240 | 299 (229‐390) | 0.5 |
| 2010/11 | 1805 | 67 (46‐78) | 13 174 | 460 (388‐520) | 6.7 |
| 2011/12 | 647 | 18 (13‐27) | 9902 | 331 (302‐369) | 2.2 |
| 2012/13 | 796 | 23 (15‐40) | 11 850 | 424 (346‐475) | 1.9 |
| 2013/14 | 1975 | 70 (55‐84) | 13 459 | 456 (392‐545) | 5.0 |
| 2014/15 | 2138 | 73 (60‐92) | 17 482 | 562 (521‐693) | 4.1 |
| 2015/16 | 3091 | 84.5 (49‐167) | 26 316 | 893.5 (753‐983) | 4.5 |
| 2016/17 | 4750 | 162 (144‐185) | 25 930 | 916 (836‐948) | 6.1 |
| 2017/18 | 5549 | 196 (137‐246) | 29 444 | 1060 (918‐1109) | 6.2 |
| 2018/19 | 15 529 | 508 (444‐569) | 41 340 | 1322 (1241‐1643) | 12.6 |
| Total | 36 351 | 198 137 | 6.3 | ||
Abbreviation: IQR, Interquartile range.
ISO week 45‐21.
Proportion of public laboratory influenza tests influenza positive.
Figure 1Inter‐seasonal proportion of influenza test positive by region and International Organisation for Standardisation (ISO) weeks of laboratory test, Queensland November 2009/10 to 2018/19
Figure 2Weekly composite laboratory‐confirmed influenza rate (per 1000 population) and proportion positive and influenza intensity thresholds, Queensland 2009‐2019. (A) Inter‐seasonal periods, 2009/10 to 2018/19. (B) Seasonal periods, 2009 to 2019
Figure 3Weekly composite laboratory‐confirmed notification rate and proportion positive, and threshold classification and strain circulation by seasonal and inter‐seasonal periods, Queensland 2009‐2019
Figure 4Heat map of weekly proportions of influenza tests positive by seasonal and inter‐seasonal periods, Queensland 2009‐2019