Literature DB >> 33367317

Catalytic bias in oxidation-reduction catalysis.

David W Mulder1, John W Peters, Simone Raugei.   

Abstract

Cataytic bias refers to the propensity of a reaction catalyst to effect a different rate acceleration in one direction versus the other in a chemical reaction under non-equilibrium conditions. In biocatalysis, the inherent bias of an enzyme is often advantagous to augment the innate thermodynamics of a reaction to promote efficiency and fidelity in the coordination of catabolic and anabolic pathways. In industrial chemical catalysis a directional cataltyic bias is a sought after property in facilitating the engineering of systems that couple catalysis with harvest and storage of for example fine chemicals or energy compounds. Interestingly, there is little information about catalytic bias in biocatalysis likely in large part due to difficulties in developing tractible assays sensitive enough to study detailed kinetics. For oxidation-reduction reactions, colorimetric redox indicators exist in a range of reduction potentials to provide a mechanism to study both directions of reactions in a fairly facile manner. The current short review attempts to define catalytic bias conceptually and to develop model systems for defining the parameters that control catalytic bias in enzyme catalyzed oxidation-reduction catalysis.

Entities:  

Year:  2020        PMID: 33367317      PMCID: PMC9186002          DOI: 10.1039/d0cc07062a

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.065


  40 in total

1.  The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations.

Authors:  W W CLELAND
Journal:  Biochim Biophys Acta       Date:  1963-01-08

2.  Reversible electrocatalytic production and oxidation of hydrogen at low overpotentials by a functional hydrogenase mimic.

Authors:  Stuart E Smith; Jenny Y Yang; Daniel L DuBois; R Morris Bullock
Journal:  Angew Chem Int Ed Engl       Date:  2012-02-14       Impact factor: 15.336

Review 3.  The three classes of hydrogenases from sulfate-reducing bacteria of the genus Desulfovibrio.

Authors:  G Fauque; H D Peck; J J Moura; B H Huynh; Y Berlier; D V DerVartanian; M Teixeira; A E Przybyla; P A Lespinat; I Moura
Journal:  FEMS Microbiol Rev       Date:  1988-12       Impact factor: 16.408

4.  Intercluster Redox Coupling Influences Protonation at the H-cluster in [FeFe] Hydrogenases.

Authors:  Patricia Rodríguez-Maciá; Krzysztof Pawlak; Olaf Rüdiger; Edward J Reijerse; Wolfgang Lubitz; James A Birrell
Journal:  J Am Chem Soc       Date:  2017-10-02       Impact factor: 15.419

Review 5.  Hydrogenases and H2 metabolism in sulfate-reducing bacteria of the Desulfovibrio genus.

Authors:  Carole Baffert; Arlette Kpebe; Luisana Avilan; Myriam Brugna
Journal:  Adv Microb Physiol       Date:  2019-04-22       Impact factor: 3.517

6.  Functional effects of active site mutations in NAD+-dependent formate dehydrogenases on transformation of hydrogen carbonate to formate.

Authors:  Ugur Pala; Berin Yelmazer; Meltem Çorbacioglu; Jouni Ruupunen; Jarkko Valjakka; Ossi Turunen; Baris Binay
Journal:  Protein Eng Des Sel       Date:  2018-09-01       Impact factor: 1.650

7.  Development of molecular electrocatalysts for energy storage.

Authors:  Daniel L DuBois
Journal:  Inorg Chem       Date:  2014-02-20       Impact factor: 5.165

8.  Comparative characterization of two distinct hydrogenases from Anabaena sp. strain 7120.

Authors:  J P Houchins; R H Burris
Journal:  J Bacteriol       Date:  1981-04       Impact factor: 3.490

9.  The roles of long-range proton-coupled electron transfer in the directionality and efficiency of [FeFe]-hydrogenases.

Authors:  Oliver Lampret; Jifu Duan; Eckhard Hofmann; Martin Winkler; Fraser A Armstrong; Thomas Happe
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-13       Impact factor: 11.205

10.  13C NMR characterization of an exchange reaction between CO and CO2 catalyzed by carbon monoxide dehydrogenase.

Authors:  Javier Seravalli; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2008-07-01       Impact factor: 3.162

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  2 in total

Review 1.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

2.  The Contribution of Proton-Donor pKa on Reactivity Profiles of [FeFe]-hydrogenases.

Authors:  Effie C Kisgeropoulos; Vivek S Bharadwaj; David W Mulder; Paul W King
Journal:  Front Microbiol       Date:  2022-09-28       Impact factor: 6.064

  2 in total

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