Literature DB >> 33363105

On the Efficient Evaluation of the Exchange Correlation Potential on Graphics Processing Unit Clusters.

David B Williams-Young1, Wibe A de Jong1, Hubertus J J van Dam2, Chao Yang1.   

Abstract

The predominance of Kohn-Sham density functional theory (KS-DFT) for the theoretical treatment of large experimentally relevant systems in molecular chemistry and materials science relies primarily on the existence of efficient software implementations which are capable of leveraging the latest advances in modern high-performance computing (HPC). With recent trends in HPC leading toward increasing reliance on heterogeneous accelerator-based architectures such as graphics processing units (GPU), existing code bases must embrace these architectural advances to maintain the high levels of performance that have come to be expected for these methods. In this work, we purpose a three-level parallelism scheme for the distributed numerical integration of the exchange-correlation (XC) potential in the Gaussian basis set discretization of the Kohn-Sham equations on large computing clusters consisting of multiple GPUs per compute node. In addition, we purpose and demonstrate the efficacy of the use of batched kernels, including batched level-3 BLAS operations, in achieving high levels of performance on the GPU. We demonstrate the performance and scalability of the implementation of the purposed method in the NWChemEx software package by comparing to the existing scalable CPU XC integration in NWChem.
Copyright © 2020 Williams-Young, de Jong, van Dam and Yang.

Entities:  

Keywords:  density functional theory; graphics processing unit; high-performance computing; parallel computing; quantum chemistry

Year:  2020        PMID: 33363105      PMCID: PMC7758429          DOI: 10.3389/fchem.2020.581058

Source DB:  PubMed          Journal:  Front Chem        ISSN: 2296-2646            Impact factor:   5.221


  28 in total

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8.  Novel Computer Architectures and Quantum Chemistry.

Authors:  Mark S Gordon; Giuseppe Barca; Sarom S Leang; David Poole; Alistair P Rendell; Jorge L Galvez Vallejo; Bryce Westheimer
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9.  NWChem: Past, present, and future.

Authors:  E Aprà; E J Bylaska; W A de Jong; N Govind; K Kowalski; T P Straatsma; M Valiev; H J J van Dam; Y Alexeev; J Anchell; V Anisimov; F W Aquino; R Atta-Fynn; J Autschbach; N P Bauman; J C Becca; D E Bernholdt; K Bhaskaran-Nair; S Bogatko; P Borowski; J Boschen; J Brabec; A Bruner; E Cauët; Y Chen; G N Chuev; C J Cramer; J Daily; M J O Deegan; T H Dunning; M Dupuis; K G Dyall; G I Fann; S A Fischer; A Fonari; H Früchtl; L Gagliardi; J Garza; N Gawande; S Ghosh; K Glaesemann; A W Götz; J Hammond; V Helms; E D Hermes; K Hirao; S Hirata; M Jacquelin; L Jensen; B G Johnson; H Jónsson; R A Kendall; M Klemm; R Kobayashi; V Konkov; S Krishnamoorthy; M Krishnan; Z Lin; R D Lins; R J Littlefield; A J Logsdail; K Lopata; W Ma; A V Marenich; J Martin Del Campo; D Mejia-Rodriguez; J E Moore; J M Mullin; T Nakajima; D R Nascimento; J A Nichols; P J Nichols; J Nieplocha; A Otero-de-la-Roza; B Palmer; A Panyala; T Pirojsirikul; B Peng; R Peverati; J Pittner; L Pollack; R M Richard; P Sadayappan; G C Schatz; W A Shelton; D W Silverstein; D M A Smith; T A Soares; D Song; M Swart; H L Taylor; G S Thomas; V Tipparaju; D G Truhlar; K Tsemekhman; T Van Voorhis; Á Vázquez-Mayagoitia; P Verma; O Villa; A Vishnu; K D Vogiatzis; D Wang; J H Weare; M J Williamson; T L Windus; K Woliński; A T Wong; Q Wu; C Yang; Q Yu; M Zacharias; Z Zhang; Y Zhao; R J Harrison
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