Literature DB >> 33357764

Bacterial Growth Control Mechanisms Inferred from Multivariate Statistical Analysis of Single-Cell Measurements.

Maryam Kohram1, Harsh Vashistha1, Stanislas Leibler2, BingKan Xue3, Hanna Salman4.   

Abstract

Analysis of single-cell measurements of bacterial growth and division often relied on testing preconceived models of cell size control mechanisms. Such an approach could limit the scope of data analysis and prevent us from uncovering new information. Here, we take an "agnostic" approach by applying regression methods to multiple simultaneously measured cellular variables, which allow us to infer dependencies among those variables from their apparent correlations. Besides previously observed correlations attributed to particular cell size control mechanisms, we identify dependencies that point to potentially new mechanisms. In particular, cells born smaller than their sisters tend to grow faster and make up for the size difference acquired during division. We also find that sister cells are correlated beyond what single-cell, size-control models predict. These trends are consistently found in repeat experiments, although the dependencies vary quantitatively. Such variation highlights the sensitivity of cell growth to environmental variations and the limitation of currently used experimental setups.
Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  bacterial growth rate; cell-cell correlations; constrained multivariate regression; single cell dynamics; size homeostasis

Mesh:

Year:  2020        PMID: 33357764     DOI: 10.1016/j.cub.2020.11.063

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  6 in total

1.  Distinguishing different modes of growth using single-cell data.

Authors:  Prathitha Kar; Sriram Tiruvadi-Krishnan; Jaana Männik; Jaan Männik; Ariel Amir
Journal:  Elife       Date:  2021-12-02       Impact factor: 8.140

2.  Inferring simple but precise quantitative models of human oocyte and early embryo development.

Authors:  Brian D Leahy; Catherine Racowsky; Daniel Needleman
Journal:  J R Soc Interface       Date:  2021-09-08       Impact factor: 4.293

3.  Simultant: simultaneous curve fitting of functions and differential equations using analytical gradient calculations.

Authors:  Julius B Kirkegaard
Journal:  BMC Bioinformatics       Date:  2022-05-21       Impact factor: 3.307

4.  Non-genetic inheritance restraint of cell-to-cell variation.

Authors:  Harsh Vashistha; Maryam Kohram; Hanna Salman
Journal:  Elife       Date:  2021-02-01       Impact factor: 8.140

5.  Cell size distribution of lineage data: analytic results and parameter inference.

Authors:  Chen Jia; Abhyudai Singh; Ramon Grima
Journal:  iScience       Date:  2021-02-24

6.  Multiple timescales in bacterial growth homeostasis.

Authors:  Alejandro Stawsky; Harsh Vashistha; Hanna Salman; Naama Brenner
Journal:  iScience       Date:  2021-12-28
  6 in total

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