Literature DB >> 33349640

A multi-dimensional, time-lapse, high content screening platform applied to schistosomiasis drug discovery.

Steven Chen1, Brian M Suzuki2,3, Jakob Dohrmann4, Rahul Singh5, Michelle R Arkin6, Conor R Caffrey7,8.   

Abstract

Approximately 10% of the world's population is at risk of schistosomiasis, a disease of poverty caused by the Schistosoma parasite. To facilitate drug discovery for this complex flatworm, we developed an automated high-content screen to quantify the multidimensional responses of Schistosoma mansoni post-infective larvae (somules) to chemical insult. We describe an integrated platform to process worms at scale, collect time-lapsed, bright-field images, segment highly variable and touching worms, and then store, visualize, and query dynamic phenotypes. To demonstrate the methodology, we treated somules with seven drugs that generated diverse responses and evaluated 45 static and kinetic response descriptors relative to concentration and time. For compound screening, we used the Mahalanobis distance to compare multidimensional phenotypic effects induced by 1323 approved drugs. Overall, we characterize both known anti-schistosomals and identify new bioactives. Apart from facilitating drug discovery, the multidimensional quantification provided by this platform will allow mapping of chemistry to phenotype.

Entities:  

Year:  2020        PMID: 33349640      PMCID: PMC7752906          DOI: 10.1038/s42003-020-01402-5

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  34 in total

Review 1.  Effect size, confidence interval and statistical significance: a practical guide for biologists.

Authors:  Shinichi Nakagawa; Innes C Cuthill
Journal:  Biol Rev Camb Philos Soc       Date:  2007-11

2.  A quantitative analysis of kinase inhibitor selectivity.

Authors:  Mazen W Karaman; Sanna Herrgard; Daniel K Treiber; Paul Gallant; Corey E Atteridge; Brian T Campbell; Katrina W Chan; Pietro Ciceri; Mindy I Davis; Philip T Edeen; Raffaella Faraoni; Mark Floyd; Jeremy P Hunt; Daniel J Lockhart; Zdravko V Milanov; Michael J Morrison; Gabriel Pallares; Hitesh K Patel; Stephanie Pritchard; Lisa M Wodicka; Patrick P Zarrinkar
Journal:  Nat Biotechnol       Date:  2008-01       Impact factor: 54.908

3.  Benchmarking of multivariate similarity measures for high-content screening fingerprints in phenotypic drug discovery.

Authors:  Felix Reisen; Xian Zhang; Daniela Gabriel; Paul Selzer
Journal:  J Biomol Screen       Date:  2013-09-17

4.  Schistosoma mansoni: chemotherapy of infections of different ages.

Authors:  A A Sabah; C Fletcher; G Webbe; M J Doenhoff
Journal:  Exp Parasitol       Date:  1986-06       Impact factor: 2.011

Review 5.  Parasites and poverty: the case of schistosomiasis.

Authors:  Charles H King
Journal:  Acta Trop       Date:  2009-12-04       Impact factor: 3.112

6.  WormAssay: a novel computer application for whole-plate motion-based screening of macroscopic parasites.

Authors:  Chris Marcellino; Jiri Gut; K C Lim; Rahul Singh; James McKerrow; Judy Sakanari
Journal:  PLoS Negl Trop Dis       Date:  2012-01-31

7.  Chemical and genetic validation of the statin drug target to treat the helminth disease, schistosomiasis.

Authors:  Liliana Rojo-Arreola; Thavy Long; Dan Asarnow; Brian M Suzuki; Rahul Singh; Conor R Caffrey
Journal:  PLoS One       Date:  2014-01-29       Impact factor: 3.240

8.  Blue Marble Health and the Global Burden of Disease Study 2013.

Authors:  Peter J Hotez; Ashish Damania; Mohsen Naghavi
Journal:  PLoS Negl Trop Dis       Date:  2016-10-27

9.  Multi-center screening of the Pathogen Box collection for schistosomiasis drug discovery.

Authors:  Martina Maccesi; Pedro H N Aguiar; Valérian Pasche; Melody Padilla; Brian M Suzuki; Sandro Montefusco; Ruben Abagyan; Jennifer Keiser; Marina M Mourão; Conor R Caffrey
Journal:  Parasit Vectors       Date:  2019-10-22       Impact factor: 3.876

10.  Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images.

Authors:  Jyrki Selinummi; Pekka Ruusuvuori; Irina Podolsky; Adrian Ozinsky; Elizabeth Gold; Olli Yli-Harja; Alan Aderem; Ilya Shmulevich
Journal:  PLoS One       Date:  2009-10-22       Impact factor: 3.240

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  3 in total

Review 1.  High-content approaches to anthelmintic drug screening.

Authors:  Mostafa Zamanian; John D Chan
Journal:  Trends Parasitol       Date:  2021-06-03

2.  Real-time and automated monitoring of antischistosomal drug activity profiles for screening of compound libraries.

Authors:  Paolo S Ravaynia; Stefan Biendl; Francesco Grassi; Jennifer Keiser; Andreas Hierlemann; Mario M Modena
Journal:  iScience       Date:  2022-03-16

Review 3.  Schistosomiasis Drug Discovery in the Era of Automation and Artificial Intelligence.

Authors:  José T Moreira-Filho; Arthur C Silva; Rafael F Dantas; Barbara F Gomes; Lauro R Souza Neto; Jose Brandao-Neto; Raymond J Owens; Nicholas Furnham; Bruno J Neves; Floriano P Silva-Junior; Carolina H Andrade
Journal:  Front Immunol       Date:  2021-05-31       Impact factor: 7.561

  3 in total

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