Literature DB >> 33347887

Temperature Dependence of the Krokinobacter rhodopsin 2 Kinetics.

Peter Eberhardt1, Chavdar Slavov1, Janina Sörmann2, Christian Bamann2, Markus Braun1, Josef Wachtveitl3.   

Abstract

We investigated the temperature-dependent kinetics of the light-driven Na+ pump Krokinobacter rhodopsin 2 (KR2) at Na+-pumping conditions. The recorded microsecond flash photolysis data were subjected to detailed global target analysis, employing Eyring constraints and spectral decomposition. The analysis resulted in the kinetic rates, the composition of the different photocycle equilibria, and the spectra of the involved photointermediates. Our results show that with the temperature increase (from 10 to 40°C), the overall photocycle duration is accelerated by a factor of 6, with the L-to-M transition exhibiting an impressive 40-fold increase. It follows from the analysis that in KR2 the chromophore and the protein scaffold are more kinetically decoupled than in other microbial rhodopsins. We link this effect to the rigidity of the retinal protein environment. This kinetic decoupling should be considered in future studies and could potentially be exploited for fine-tuning biotechnological applications.
Copyright © 2020 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2020        PMID: 33347887      PMCID: PMC7895995          DOI: 10.1016/j.bpj.2020.12.011

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

Review 1.  Global and target analysis of time-resolved spectra.

Authors:  Ivo H M van Stokkum; Delmar S Larsen; Rienk van Grondelle
Journal:  Biochim Biophys Acta       Date:  2004-07-09

2.  The photocycle of channelrhodopsin-2: ultrafast reaction dynamics and subsequent reaction steps.

Authors:  Mirka-Kristin Verhoefen; Christian Bamann; Rene Blöcher; Ute Förster; Ernst Bamberg; Josef Wachtveitl
Journal:  Chemphyschem       Date:  2010-10-04       Impact factor: 3.102

3.  Bacterial, archaeal and viral-like rhodopsins from the Red Sea.

Authors:  Alon Philosof; Oded Béjà
Journal:  Environ Microbiol Rep       Date:  2013-02-17       Impact factor: 3.541

4.  Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump.

Authors:  Hideaki E Kato; Keiichi Inoue; Rei Abe-Yoshizumi; Yoshitaka Kato; Hikaru Ono; Masae Konno; Shoko Hososhima; Toru Ishizuka; Mohammad Razuanul Hoque; Hirofumi Kunitomo; Jumpei Ito; Susumu Yoshizawa; Keitaro Yamashita; Mizuki Takemoto; Tomohiro Nishizawa; Reiya Taniguchi; Kazuhiro Kogure; Andrés D Maturana; Yuichi Iino; Hiromu Yawo; Ryuichiro Ishitani; Hideki Kandori; Osamu Nureki
Journal:  Nature       Date:  2015-04-06       Impact factor: 49.962

5.  Global abundance of microbial rhodopsins.

Authors:  Omri M Finkel; Oded Béjà; Shimshon Belkin
Journal:  ISME J       Date:  2012-10-11       Impact factor: 10.302

6.  A light-driven sodium ion pump in marine bacteria.

Authors:  Keiichi Inoue; Hikaru Ono; Rei Abe-Yoshizumi; Susumu Yoshizawa; Hiroyasu Ito; Kazuhiro Kogure; Hideki Kandori
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

7.  The photochemistry of sodium ion pump rhodopsin observed by watermarked femto- to submillisecond stimulated Raman spectroscopy.

Authors:  Yusaku Hontani; Keiichi Inoue; Miroslav Kloz; Yoshitaka Kato; Hideki Kandori; John T M Kennis
Journal:  Phys Chem Chem Phys       Date:  2016-08-23       Impact factor: 3.676

8.  A model-independent approach to assigning bacteriorhodopsin's intramolecular reactions to photocycle intermediates.

Authors:  B Hessling; G Souvignier; K Gerwert
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

9.  Femtosecond-to-millisecond structural changes in a light-driven sodium pump.

Authors:  David Ehrenberg; Tobias Weinert; Petr Skopintsev; Daniel James; Rajiv K Kar; Philip J M Johnson; Dmitry Ozerov; Antonia Furrer; Isabelle Martiel; Florian Dworkowski; Karol Nass; Gregor Knopp; Claudio Cirelli; Christopher Arrell; Dardan Gashi; Sandra Mous; Maximilian Wranik; Thomas Gruhl; Demet Kekilli; Steffen Brünle; Xavier Deupi; Gebhard F X Schertler; Roger M Benoit; Valerie Panneels; Przemyslaw Nogly; Igor Schapiro; Christopher Milne; Joachim Heberle; Jörg Standfuss
Journal:  Nature       Date:  2020-05-20       Impact factor: 49.962

10.  Structure and mechanisms of sodium-pumping KR2 rhodopsin.

Authors:  Kirill Kovalev; Vitaly Polovinkin; Ivan Gushchin; Alexey Alekseev; Vitaly Shevchenko; Valentin Borshchevskiy; Roman Astashkin; Taras Balandin; Dmitry Bratanov; Svetlana Vaganova; Alexander Popov; Vladimir Chupin; Georg Büldt; Ernst Bamberg; Valentin Gordeliy
Journal:  Sci Adv       Date:  2019-04-10       Impact factor: 14.136

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