| Literature DB >> 33341915 |
L Papp1, C P Spielvogel2,3, B Grubmüller4, M Grahovac2, D Krajnc1, B Ecsedi1, R A M Sareshgi2, D Mohamad2, M Hamboeck2, I Rausch1, M Mitterhauser2,5, W Wadsak2, A R Haug2,3, L Kenner3,6, P Mazal6, M Susani6, S Hartenbach7, P Baltzer8, T H Helbich8, G Kramer4, S F Shariat4, T Beyer1, M Hartenbach2, M Hacker9.
Abstract
PURPOSE: Risk classification of primary prostate cancer in clinical routine is mainly based on prostate-specific antigen (PSA) levels, Gleason scores from biopsy samples, and tumor-nodes-metastasis (TNM) staging. This study aimed to investigate the diagnostic performance of positron emission tomography/magnetic resonance imaging (PET/MRI) in vivo models for predicting low-vs-high lesion risk (LH) as well as biochemical recurrence (BCR) and overall patient risk (OPR) with machine learning.Entities:
Keywords: Biochemical recurrence prediction; Lesion risk prediction; Machine learning; Overall patient risk prediction; PET/MRI; Prostate cancer; Radiomics
Mesh:
Substances:
Year: 2020 PMID: 33341915 PMCID: PMC8113201 DOI: 10.1007/s00259-020-05140-y
Source DB: PubMed Journal: Eur J Nucl Med Mol Imaging ISSN: 1619-7070 Impact factor: 9.236
Characteristics of the 52 patients involved in this study, at the time of radical prostatectomy (RP)
| Patient characteristics ( | Value |
|---|---|
| Age (years), median (IQR) | 64 (59–70) |
| PSA (ng/ml), median (IQR) | 7.5 (5.0–13.4) |
| Pathologic T staging, | |
| 2 | 20 (0.38) |
| 2a | 1 (0.02) |
| 2c | 2 (0.04) |
| 3a | 11 (0.21) |
| 3b | 17 (0.33) |
| 4 | 1 (0.02) |
| Primary Gleason pattern, | |
| 3 | 18 (0.35) |
| 4 | 31 (0.6) |
| 5 | 3 (0.05) |
| Secondary Gleason pattern, | |
| 3 | 16 (0.31) |
| 4 | 26 (0.5) |
| 5 | 10 (0.19) |
| Total Gleason Score, | |
| 6 | 3 (0.06) |
| 7 | 14 (0.27) |
| > = 8 | 35 (0.67) |
| Biochemical recurrence (BCR), | |
| Yes | 9 (0.17) |
| No | 27 (0.52) |
| NA | 16 (0.31) |
| Overall patient risk (OPR), | |
| Yes | 23 (0.44) |
| No | 27 (0.52) |
| NA | 2 (0.04) |
| Follow-up (months), median (IQR) | 41 (32–49) |
IQR interquartile range, NA not available
Fig. 1The analysis workflow of the collected dataset. The pre-study of the prospective randomized trial NCT02659527 provided data records of 122 patients between 2014 and 2015. Patients having a dual-tracer positron emission tomography/magnetic resonance imaging (PET/MRI), prostate-specific antigen (PSA) screening, and whole-mount histopathology through undergone surgery were included in the analysis (n = 52). Only [68Ga]Ga-PSMA-11 PET, apparent diffusion coefficient (ADC), and transverse relaxation time-weighted (T2w) MRI images were selected for radiomic analysis. Overall 121 PET/MRI-positive lesions were delineated from the 52 patients followed by radiomics feature extraction. The 121 lesions underwent prostate specific membrane antigen (PSMA) standardized uptake value (SUV) and volume area under the receiver operator characteristics curve (AUC) analysis. Monte Carlo (MC) cross-validation scheme was utilized to generate patient training and validation sets 1000-times. This MC scheme was utilized to build lesion low-vs-high (LH) prediction models via machine learning (MLH). Biochemical recurrence (BCR, n = 36) and overall patient risk (OPR, n = 50) patient prediction models were built across the same MC folds (MBCR and MOPR respectively). All machine learning models underwent confusion matrix analytics, sham data analysis, and AUC analysis across MC folds. BCR and OPR were also predicted by standard D’Amico score
Fig. 2(A) Positron emission tomography/magnetic resonance imaging (PET/MRI) views of a prostate cancer patient with volumes of interests (VOIs) drawn over lesions with Gleason 4 (red) and high-grade pin (blue) patterns. Standard iso-count 3D VOIs were drawn over the [68Ga]Ga-PSMA-11 PET in the Hermes Hybrid 3D software. First row: [68Ga]Ga-PSMA-11 PET; second row: apparent diffusion coefficient (ADC) MRI; third row: fused [68Ga]Ga-PSMA-11 PET and transverse relaxation time-weighted (T2w) MRI images. Note that each image is represented in its own frame of reference, while the fused PET/MRI view is aligned to the frame of reference of the T2-weighted MRI. Hence, the cross-sections of the drawn VOIs look different on each view. (B) An example histopathological slice with the same color codes as in case of the PET/MRI views (red: Gleason 4, blue: high-grade pin)
Characteristics of the 121 delineated lesions in the 52 patients
| Lesion characteristics ( | Value |
|---|---|
| Delineated lesions, | |
| Benign prostatic hyperplasia | 20 (0.17) |
| Low grade PIN | 16 (0.13) |
| High grade PIN | 5 (0.04) |
| Prostatitis | 2 (0.02) |
| Gleason 3 | 17 (0.14) |
| Gleason 4 | 50 (0.41) |
| Gleason 5 | 11 (0.09) |
| Lesion high-low risk pattern, | |
| High risk pattern | 61 (0.504) |
| Low risk pattern | 60 (0.496) |
Fig. 3Area under the receiver operator characteristics curves (AUC) of conventional standardized uptake values (SUV) as well as lesion volume together with the machine learning low-vs-high lesion risk scores. Note that the MLH AUC performance is a conservative estimate, as it is a Monte Carlo cross-validation AUC, while the SUV and volume curves were measured directly from the whole dataset
Fig. 4Occurrence of the highest ranked features across the 1000-fold Monte Carlo cross-validation scheme. PSMA—[68Ga]Ga-PSMA-11 positron emission tomography (PET); stat.cov: coefficient of variation; cm.info.corr.1—gray level co-occurrence matrix information correlation type 1; ADC—apparent diffusion coefficient; stat.iqr—interquartile range; cm.joint.entr—gray level co-occurrence matrix joint entropy; dzm.hgze—gray level distance zone matrix high gray zone emphasis
Fig. 5Left: validation performance estimations of predicting biochemical recurrence (BCR) by MBCR and clinical standard models. Right: validation performance estimations of predicting overall patient risk (OPR) MOPR and the clinical standard models. SENS—sensitivity; SPEC—specificity; ACC—accuracy; PPV—positive predictive value; NPV—negative predictive value. Confusion matrix values are in percentages. Note that standard risk estimator had a confusion analytics performance estimation in the whole dataset, as it is an established model, while the performance of MBCR and MOPR models was calculated through Monte Carlo cross-validation
| Author | Contribution |
|---|---|
| L. Papp | Radiomics and machine learning methodological design, study concept and execution, literature research |
| C. P. Spielvogel | Random forest implementation, validation, and parameter tuning |
| B. Grubmüller | Biochemical recurrence reference standard collection, study design, review |
| M. Grahovac | High-performance computing execution, literature research |
| D. Krajnc | Radiomic feature purification, class imbalance handling, literature research |
| B. Ecsedi | Implementation and validation of the MUW Radiomics Engine as of IBSI guidelines and reference datasets |
| R. A. M. Sareshgi, M. Grahovac, D. Mohamad, M. Hamboeck | Lesion delineation |
| I. Rausch | PET/MR protocol set up, [18F]FMC cross-effect analysis and estimation in [68Ga]Ga-PSMA-11, literature research |
| M. Mitterhauser | Study design review and approval, review |
| W. Wadsak | Supervision and set-up of radiotracer synthesis and quality control |
| A. Haug | Study concept, review |
| L. Kenner | Histopathological analysis and labelling |
| P. Mazal | Histopathological analysis and labelling |
| M. Susani | Histopathological analysis and labelling |
| S. Hartenbach | Whole-mount histopathological analysis and labelling |
| P. Baltzer | MRI acquisition protocol setup |
| T. Helbich | MRI acquisition protocol setup, study concept |
| G. Kramer | Generating and processing clinical data including follow-up |
| S. F. Shariat | Generating and processing clinical data including follow-up |
| T. Beyer | Study design review and approval |
| M. Hartenbach | PET/MR acquisition protocol set up, initial data collection and preparation, delineation review and validation, study concept, study PI, review |
| M. Hacker | Study concept, study PI, review |