Literature DB >> 333395

RNA-ligant interactions. (I) Magnesium binding sites in yeast tRNAPhe.

S R Holbrook, J L Sussman, R W Warrant, G M Church, S H Kim.   

Abstract

X-ray crystallagraphic studies studies indicate that there are at least four site-specifically bound hydrated Mg2+ ions, [Mg(H2O)n]2+, in yeast tRNAPhe. The size and the octahedral coordination geometry, rather than the charge, of [Mg(H2O)N]2+ appear to be the primary reasons for the specificity of magnesium ions in site-binding and in the stabilization of the tertiary structure of tRNA.

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Year:  1977        PMID： 333395      PMCID： PMC342610          DOI： 10.1093/nar/4.8.2811

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  19 in total

1.  A crystallographic study of metal-binding to yeast phenylalanine transfer RNA.

Authors:  A Jack; J E Ladner; D Rhodes; R S Brown; A Klug
Journal:  J Mol Biol       Date:  1977-04-15       Impact factor: 5.469

2.  Interaction of manganese with fragments, complementary fragment recombinations, and whole molecules of yeast phenylalanine specific transfer RNA.

Authors:  A A Schreier; P R Schimmel
Journal:  J Mol Biol       Date:  1974-07-05       Impact factor: 5.469

3.  Enhancement of Tb(III) and Eu(III) fluorescence in complexes with Escherichia coli tRNA.

Authors:  M S Kayne; M Cohn
Journal:  Biochemistry       Date:  1974-09-24       Impact factor: 3.162

4.  tRNA structure and binding sites for cations.

Authors:  A Danchin
Journal:  Biopolymers       Date:  1972       Impact factor: 2.505

5.  Investigation of the structure of yeast tRNAphe by nuclear magnetic resonance: paramagnetic rare earth ion probes of structure.

Authors:  C R Jones; D R Kearns
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

6.  Cation requirements of isoleucyl-tRNA synthetase from Escherichia coli.

Authors:  M S Kayne; M Cohn
Journal:  Biochem Biophys Res Commun       Date:  1972-02-16       Impact factor: 3.575

7.  Cooperative binding of manganese (II) to transfer RNA.

Authors:  A Danchin; M Guéron
Journal:  Eur J Biochem       Date:  1970-11

8.  Proton magnetic relaxation studies of marganous complexes of transfer RNA and related compounds.

Authors:  M Cohn; A Danchin; M Grunberg-Manago
Journal:  J Mol Biol       Date:  1969-01-14       Impact factor: 5.469

9.  High-resolution x-ray diffraction patterns of crystalline transfer RNA that show helical regions.

Authors:  S H Kim; G Quigley; F L Suddath; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1971-04       Impact factor: 11.205

10.  Thermodynamic studies of transfer ribonucleic acids. I. Magnesium binding to yeast phenylalanine transfer ribonucleic acid.

Authors:  G Rialdi; J Levy; R Biltonen
Journal:  Biochemistry       Date:  1972-06-20       Impact factor: 3.162
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  46 in total

1.  Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules.

Authors:  Harold D Kim; G Ulrich Nienhaus; Taekjip Ha; Jeffrey W Orr; James R Williamson; Steven Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-02       Impact factor: 11.205

2.  Inhibition of RNase P RNA cleavage by aminoglycosides.

Authors:  N E Mikkelsen; M Brännvall; A Virtanen; L A Kirsebom
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

3.  Thiophosphate interference experiments locate phosphates important for the hammerhead RNA self-cleavage reaction.

Authors:  D E Ruffner; O C Uhlenbeck
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

4.  Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena.

Authors:  A M Pyle; J A McSwiggen; T R Cech
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

5.  Conformational energy and structure in canonical and noncanonical forms of tRNA determined by temperature analysis of the rate of s(4)U8-C13 photocrosslinking.

Authors:  Wayne Huggins; Tatjana Shapkina; Paul Wollenzien
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

6.  Tm studies of a tertiary structure from the human hepatitis delta agent which functions in vitro as a ribozyme control element.

Authors:  A D Branch; J A Polaskova; D R Schreiber
Journal:  Nucleic Acids Res       Date:  1995-11-11       Impact factor: 16.971

7.  Biochemical and Biophysical Understanding of Metal Ion Selectivity of DNAzymes.

Authors:  Kevin Hwang; Parisa Hosseinzadeh; Yi Lu
Journal:  Inorganica Chim Acta       Date:  2016-04-23       Impact factor: 2.545

8.  Characterization of human immunodeficiency virus type 1 dimeric RNA from wild-type and protease-defective virions.

Authors:  W Fu; R J Gorelick; A Rein
Journal:  J Virol       Date:  1994-08       Impact factor: 5.103

9.  Mechanism of codon recognition by transfer RNA studied with oligonucleotides larger than triplets.

Authors:  D Labuda; G Striker; H Grosjean; D Porschke
Journal:  Nucleic Acids Res       Date:  1985-05-24       Impact factor: 16.971

10.  Visualization of RNA tertiary structure by RNA-EDTA.Fe(II) autocleavage: analysis of tRNA(Phe) with uridine-EDTA.Fe(II) at position 47.

Authors:  H Han; P B Dervan
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-24       Impact factor: 11.205
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