Literature DB >> 33338886

Genetic variants as biomarkers for progression and resistance in multiple myeloma.

Rachel A Montel1, Matthew Gregory2, Tinchun Chu3, Jessica Cottrell4, Constantine Bitasktsis5, Sulie L Chang6.   

Abstract

Technical advances in genome sequencing, in particular whole-genome sequencing (WGS), provide adequate tools to understanding cancer at the molecular level while specifically focusing on genetic variants that contribute to the causation and progression of pathogenic cancers. Multiple myeloma (MM), a malignant disease of plasma cells that is marked as rare yet incurable, may be diagnosed by WGS tools, as this cancer is associated with chromosomal translocations and mutations in specific protein-coding genes. Among these protein-coding genes, many are known to be responsible for cell cycle regulation in MM. The initial significant protein-coding mutations were found in NRAS, KRAS and TP53 and later reported in FAM46C, DIS3, CCND1, PNRC1, ALOX12B, HLA-A and MAGED1. Here, we report gene network associations of MM using Qiagen's Ingenuity Pathway Analysis (IPA) software and compared biomarker information reported in IPA for these protein-coding genes (NRAS, TP53 and KRAS). Using Qiagen's Ingenuity Variant Analysis (IVA), we characterized cancer driver variants in MT-ND1 as likely pathogenic or variants of uncertain significance.
Copyright © 2020. Published by Elsevier Inc.

Entities:  

Keywords:  Genetic variants; Multiple myeloma; Pathway analysis

Mesh:

Substances:

Year:  2020        PMID: 33338886      PMCID: PMC8688903          DOI: 10.1016/j.cancergen.2020.12.001

Source DB:  PubMed          Journal:  Cancer Genet


  6 in total

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Authors:  Gareth J Morgan; Leo Rasche
Journal:  Expert Rev Hematol       Date:  2018-06-26       Impact factor: 2.929

Review 2.  Multiple myeloma: evolving genetic events and host interactions.

Authors:  W Michael Kuehl; P Leif Bergsagel
Journal:  Nat Rev Cancer       Date:  2002-03       Impact factor: 60.716

3.  Initial genome sequencing and analysis of multiple myeloma.

Authors:  Michael A Chapman; Michael S Lawrence; Jonathan J Keats; Kristian Cibulskis; Carrie Sougnez; Anna C Schinzel; Christina L Harview; Jean-Philippe Brunet; Gregory J Ahmann; Mazhar Adli; Kenneth C Anderson; Kristin G Ardlie; Daniel Auclair; Angela Baker; P Leif Bergsagel; Bradley E Bernstein; Yotam Drier; Rafael Fonseca; Stacey B Gabriel; Craig C Hofmeister; Sundar Jagannath; Andrzej J Jakubowiak; Amrita Krishnan; Joan Levy; Ted Liefeld; Sagar Lonial; Scott Mahan; Bunmi Mfuko; Stefano Monti; Louise M Perkins; Robb Onofrio; Trevor J Pugh; S Vincent Rajkumar; Alex H Ramos; David S Siegel; Andrey Sivachenko; A Keith Stewart; Suzanne Trudel; Ravi Vij; Douglas Voet; Wendy Winckler; Todd Zimmerman; John Carpten; Jeff Trent; William C Hahn; Levi A Garraway; Matthew Meyerson; Eric S Lander; Gad Getz; Todd R Golub
Journal:  Nature       Date:  2011-03-24       Impact factor: 49.962

4.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

5.  An integrated map of structural variation in 2,504 human genomes.

Authors:  Peter H Sudmant; Tobias Rausch; Eugene J Gardner; Robert E Handsaker; Alexej Abyzov; John Huddleston; Yan Zhang; Kai Ye; Goo Jun; Markus Hsi-Yang Fritz; Miriam K Konkel; Ankit Malhotra; Adrian M Stütz; Xinghua Shi; Francesco Paolo Casale; Jieming Chen; Fereydoun Hormozdiari; Gargi Dayama; Ken Chen; Maika Malig; Mark J P Chaisson; Klaudia Walter; Sascha Meiers; Seva Kashin; Erik Garrison; Adam Auton; Hugo Y K Lam; Xinmeng Jasmine Mu; Can Alkan; Danny Antaki; Taejeong Bae; Eliza Cerveira; Peter Chines; Zechen Chong; Laura Clarke; Elif Dal; Li Ding; Sarah Emery; Xian Fan; Madhusudan Gujral; Fatma Kahveci; Jeffrey M Kidd; Yu Kong; Eric-Wubbo Lameijer; Shane McCarthy; Paul Flicek; Richard A Gibbs; Gabor Marth; Christopher E Mason; Androniki Menelaou; Donna M Muzny; Bradley J Nelson; Amina Noor; Nicholas F Parrish; Matthew Pendleton; Andrew Quitadamo; Benjamin Raeder; Eric E Schadt; Mallory Romanovitch; Andreas Schlattl; Robert Sebra; Andrey A Shabalin; Andreas Untergasser; Jerilyn A Walker; Min Wang; Fuli Yu; Chengsheng Zhang; Jing Zhang; Xiangqun Zheng-Bradley; Wanding Zhou; Thomas Zichner; Jonathan Sebat; Mark A Batzer; Steven A McCarroll; Ryan E Mills; Mark B Gerstein; Ali Bashir; Oliver Stegle; Scott E Devine; Charles Lee; Evan E Eichler; Jan O Korbel
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

6.  Impact of mitochondrial DNA mutations in multiple myeloma.

Authors:  Phuc H Hoang; Alex J Cornish; Daniel Chubb; Graham Jackson; Martin Kaiser; Richard S Houlston
Journal:  Blood Cancer J       Date:  2020-05-01       Impact factor: 11.037

  6 in total
  2 in total

1.  Multiple Myeloma: Bioinformatic Analysis for Identification of Key Genes and Pathways.

Authors:  Chaimaa Saadoune; Badreddine Nouadi; Hasna Hamdaoui; Fatima Chegdani; Faiza Bennis
Journal:  Bioinform Biol Insights       Date:  2022-08-06

2.  The Rationale for the Dual-Targeting Therapy for RSK2 and AKT in Multiple Myeloma.

Authors:  Reiko Isa; Mano Horinaka; Taku Tsukamoto; Kentaro Mizuhara; Yuto Fujibayashi; Yoko Taminishi-Katsuragawa; Haruya Okamoto; Shusuke Yasuda; Yuka Kawaji-Kanayama; Yayoi Matsumura-Kimoto; Shinsuke Mizutani; Yuji Shimura; Masafumi Taniwaki; Toshiyuki Sakai; Junya Kuroda
Journal:  Int J Mol Sci       Date:  2022-03-08       Impact factor: 5.923

  2 in total

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