Literature DB >> 33333022

Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning.

Elizabeth K Unger1, Jacob P Keller2, Michael Altermatt3, Ruqiang Liang1, Aya Matsui4, Chunyang Dong1, Olivia J Hon5, Zi Yao6, Junqing Sun1, Samba Banala2, Meghan E Flanigan5, David A Jaffe1, Samantha Hartanto1, Jane Carlen1, Grace O Mizuno1, Phillip M Borden2, Amol V Shivange3, Lindsay P Cameron1, Steffen Sinning7, Suzanne M Underhill8, David E Olson1, Susan G Amara8, Duncan Temple Lang1, Gary Rudnick7, Jonathan S Marvin2, Luke D Lavis2, Henry A Lester3, Veronica A Alvarez4, Andrew J Fisher1, Jennifer A Prescher6, Thomas L Kash5, Vladimir Yarov-Yarovoy1, Viviana Gradinaru3, Loren L Looger9, Lin Tian10.   

Abstract

Serotonin plays a central role in cognition and is the target of most pharmaceuticals for psychiatric disorders. Existing drugs have limited efficacy; creation of improved versions will require better understanding of serotonergic circuitry, which has been hampered by our inability to monitor serotonin release and transport with high spatial and temporal resolution. We developed and applied a binding-pocket redesign strategy, guided by machine learning, to create a high-performance, soluble, fluorescent serotonin sensor (iSeroSnFR), enabling optical detection of millisecond-scale serotonin transients. We demonstrate that iSeroSnFR can be used to detect serotonin release in freely behaving mice during fear conditioning, social interaction, and sleep/wake transitions. We also developed a robust assay of serotonin transporter function and modulation by drugs. We expect that both machine-learning-guided binding-pocket redesign and iSeroSnFR will have broad utility for the development of other sensors and in vitro and in vivo serotonin detection, respectively.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  OSTA; SERT; fear-learning; fiber photometry; fluorescence protein sensor; iSeroSnFR; machine learning; serotonin; sleep-wake; social behaviors

Mesh:

Substances:

Year:  2020        PMID: 33333022      PMCID: PMC8025677          DOI: 10.1016/j.cell.2020.11.040

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  106 in total

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3.  Targeted gene expression in dopamine and serotonin neurons of the mouse brain.

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Journal:  J Neurosci Methods       Date:  2004-11-24       Impact factor: 2.390

4.  Efficient gene transfer into the embryonic mouse brain using in vivo electroporation.

Authors:  T Saito; N Nakatsuji
Journal:  Dev Biol       Date:  2001-12-01       Impact factor: 3.582

5.  Corticotropin-releasing factor in the dorsal raphe elicits temporally distinct serotonergic responses in the limbic system in relation to fear behavior.

Authors:  G L Forster; N Feng; M J Watt; W J Korzan; N J Mouw; C H Summers; K J Renner
Journal:  Neuroscience       Date:  2006-05-18       Impact factor: 3.590

6.  In Vivo Ambient Serotonin Measurements at Carbon-Fiber Microelectrodes.

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