Literature DB >> 33332384

Nationwide germline whole genome sequencing of 198 consecutive pediatric cancer patients reveals a high frequency of cancer prone syndromes.

Anna Byrjalsen1,2, Thomas V O Hansen1,2, Ulrik K Stoltze1, Mana M Mehrjouy1,2, Nanna Moeller Barnkob3, Lisa L Hjalgrim2, René Mathiasen2, Charlotte K Lautrup4, Pernille A Gregersen5, Henrik Hasle6, Peder S Wehner7, Ruta Tuckuviene8, Peter Wad Sackett3, Adrian O Laspiur3, Maria Rossing9, Rasmus L Marvig9, Niels Tommerup10, Tina Elisabeth Olsen11, David Scheie11, Ramneek Gupta3, Anne-Marie Gerdes1, Kjeld Schmiegelow2,12, Karin Wadt1.   

Abstract

PURPOSE: Historically, cancer predisposition syndromes (CPSs) were rarely established for children with cancer. This nationwide, population-based study investigated how frequently children with cancer had or were likely to have a CPS.
METHODS: Children (0-17 years) in Denmark with newly diagnosed cancer were invited to participate in whole-genome sequencing of germline DNA. Suspicion of CPS was assessed according to Jongmans'/McGill Interactive Pediatric OncoGenetic Guidelines (MIPOGG) criteria and familial cancer diagnoses were verified using population-based registries.
RESULTS: 198 of 235 (84.3%) eligible patients participated, of whom 94/198 (47.5%) carried pathogenic variants (PVs) in a CPS gene or had clinical features indicating CPS. Twenty-nine of 198 (14.6%) patients harbored a CPS, of whom 21/198 (10.6%) harbored a childhood-onset and 9/198 (4.5%) an adult-onset CPS. In addition, 23/198 (11.6%) patients carried a PV associated with biallelic CPS. Seven of the 54 (12.9%) patients carried two or more variants in different CPS genes. Seventy of 198 (35.4%) patients fulfilled the Jongmans' and/or MIPOGG criteria indicating an underlying CPS, including two of the 9 (22.2%) patients with an adult-onset CPS versus 18 of the 21 (85.7%) patients with a childhood-onset CPS (p = 0.0022), eight of the additional 23 (34.8%) patients with a heterozygous PV associated with biallelic CPS, and 42 patients without PVs. Children with a central nervous system (CNS) tumor had family members with CNS tumors more frequently than patients with other cancers (11/44, p = 0.04), but 42 of 44 (95.5%) cases did not have a PV in a CPS gene.
CONCLUSION: These results demonstrate the value of systematically screening pediatric cancer patients for CPSs and indicate that a higher proportion of childhood cancers may be linked to predisposing germline variants than previously supposed.

Entities:  

Year:  2020        PMID: 33332384     DOI: 10.1371/journal.pgen.1009231

Source DB:  PubMed          Journal:  PLoS Genet        ISSN: 1553-7390            Impact factor:   5.917


  15 in total

Review 1.  Genetic predisposition to central nervous system tumors in children - what the neurosurgeon should know.

Authors:  Jon Foss-Skiftesvik; Ulrik Kristoffer Stoltze
Journal:  Acta Neurochir (Wien)       Date:  2022-06-03       Impact factor: 2.216

2.  Biomarker testing in cancer management- can one size fit all?

Authors:  Lynette M Sholl; Balazs Halmos
Journal:  Br J Cancer       Date:  2022-09-05       Impact factor: 9.075

3.  Performance of the McGill Interactive Pediatric OncoGenetic Guidelines for Identifying Cancer Predisposition Syndromes.

Authors:  Catherine Goudie; Leora Witkowski; Noelle Cullinan; Lara Reichman; Ian Schiller; Melissa Tachdjian; Linlea Armstrong; Katherine A Blood; Josée Brossard; Ledia Brunga; Chantel Cacciotti; Kimberly Caswell; Sonia Cellot; Mary Egan Clark; Catherine Clinton; Hallie Coltin; Kathleen Felton; Conrad V Fernandez; Adam J Fleming; Noemi Fuentes-Bolanos; Paul Gibson; Ronald Grant; Rawan Hammad; Lynn W Harrison; Meredith S Irwin; Donna L Johnston; Sarah Kane; Lucie Lafay-Cousin; Irene Lara-Corrales; Valerie Larouche; Natalie Mathews; M Stephen Meyn; Orli Michaeli; Renée Perrier; Meghan Pike; Angela Punnett; Vijay Ramaswamy; Jemma Say; Gino Somers; Uri Tabori; My Linh Thibodeau; Annie-Kim Toupin; Katherine M Tucker; Kalene van Engelen; Stephanie Vairy; Nicolas Waespe; Meera Warby; Jonathan D Wasserman; James A Whitlock; Daniel Sinnett; Nada Jabado; Paul C Nathan; Adam Shlien; Junne Kamihara; Rebecca J Deyell; David S Ziegler; Kim E Nichols; Nandini Dendukuri; David Malkin; Anita Villani; William D Foulkes
Journal:  JAMA Oncol       Date:  2021-12-01       Impact factor: 33.006

Review 4.  Cancer predisposition in pediatric neuro-oncology-practical approaches and ethical considerations.

Authors:  Steffen Hirsch; Nicola Dikow; Stefan M Pfister; Kristian W Pajtler
Journal:  Neurooncol Pract       Date:  2021-05-28

5.  Companion Tumor Sequencing to Assess the Clinical Significance of Germline Sequencing in Children With Cancer.

Authors:  Tinaye Mutetwa; Catherine Goudie; William D Foulkes; Paz Polak
Journal:  JAMA Netw Open       Date:  2021-11-01

Review 6.  Computational Genomics in the Era of Precision Medicine: Applications to Variant Analysis and Gene Therapy.

Authors:  Yung-Chun Wang; Yuchang Wu; Julie Choi; Garrett Allington; Shujuan Zhao; Mariam Khanfar; Kuangying Yang; Po-Ying Fu; Max Wrubel; Xiaobing Yu; Kedous Y Mekbib; Jack Ocken; Hannah Smith; John Shohfi; Kristopher T Kahle; Qiongshi Lu; Sheng Chih Jin
Journal:  J Pers Med       Date:  2022-01-27

Review 7.  DICER1 tumor predisposition syndrome: an evolving story initiated with the pleuropulmonary blastoma.

Authors:  Iván A González; Douglas R Stewart; Kris Ann P Schultz; Amanda P Field; D Ashley Hill; Louis P Dehner
Journal:  Mod Pathol       Date:  2021-10-01       Impact factor: 7.842

8.  Prevalence of (Epi)genetic Predisposing Factors in a 5-Year Unselected National Wilms Tumor Cohort: A Comprehensive Clinical and Genomic Characterization.

Authors:  Janna A Hol; Roland P Kuiper; Freerk van Dijk; Esmé Waanders; Sophie E van Peer; Marco J Koudijs; Reno Bladergroen; Simon V van Reijmersdal; Lionel M Morgado; Jet Bliek; Maria Paola Lombardi; Saskia Hopman; Jarno Drost; Ronald R de Krijger; Marry M van den Heuvel-Eibrink; Marjolijn C J Jongmans
Journal:  J Clin Oncol       Date:  2022-03-01       Impact factor: 50.717

Review 9.  Genetic Disorders with Predisposition to Paediatric Haematopoietic Malignancies-A Review.

Authors:  Aleksandra Filipiuk; Agata Kozakiewicz; Kamil Kośmider; Monika Lejman; Joanna Zawitkowska
Journal:  Cancers (Basel)       Date:  2022-07-22       Impact factor: 6.575

Review 10.  Diagnostic Strategies and Algorithms for Investigating Cancer Predisposition Syndromes in Children Presenting with Malignancy.

Authors:  Linda Rossini; Caterina Durante; Silvia Bresolin; Enrico Opocher; Antonio Marzollo; Alessandra Biffi
Journal:  Cancers (Basel)       Date:  2022-07-31       Impact factor: 6.575

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