| Literature DB >> 33327303 |
Chenyi Zhuo1, Tingzhuang Yi, Cheng Wei, Xianjian Wu, Xiaoning Cen, Shi Feng, Xiqiang Tang, Yang Zhou, Qianli Tang.
Abstract
BACKGROUND: We performed a meta-analysis to more precisely evaluate the association between the cytotoxic T lymphocyte-associated protein 4 (CTLA-4) -1772T/C polymorphism and overall gastric cancer (GC) risk and the influence of ethnicity and the source of controls on that association.Entities:
Mesh:
Substances:
Year: 2020 PMID: 33327303 PMCID: PMC7738123 DOI: 10.1097/MD.0000000000023542
Source DB: PubMed Journal: Medicine (Baltimore) ISSN: 0025-7974 Impact factor: 1.817
Databases searching terms.
| Search NO. | Search criterion of PubMed (from inception to 27 Mar 2020) (n = 19) | Items found |
| #4 | Search ((((((cytotoxic T lymphocyte-associated protein 4[Title/Abstract]) OR CTLA-4 [Title/Abstract]) OR rs733618 [Title/Abstract]) OR -1722T/ C[Title/Abstract])) AND (((((((((((((((((((((((“Polymorphism, Single Nucleotide” [Mesh]) OR “Genotype” [Mesh]) OR “Alleles” [Mesh]) OR polymorphism [Title/Abstract]) OR genetic variant [Title/Abstract]) OR genetic variants [Title/Abstract]) OR genetic polymorphism [Title/Abstract]) OR genetic [Title/Abstract]) OR genetic variant) OR genetic variants) OR “Genetic Variation” [Mesh]))))))) OR (((((SNP/) OR mutation/) OR variation/) OR single nucleotide polymorphism) OR variant/)))))))) AND (((((((((((((((“Stomach Neoplasms”[Mesh]) OR Stomach Neoplasms) OR Gastric Neoplasms) OR Gastric Neoplasm) OR Neoplasm, Gastric) OR Neoplasms, Gastric) OR Cancer of Stomach) OR Stomach Cancers) OR Gastric Cancer) OR Cancer, Gastric) OR Cancers, Gastric) OR Gastric Cancers) OR Stomach Cancer) OR Cancer, Stomach) OR Cancers, Stomach) | 19 |
| #3 | Search (((cytotoxic T lymphocyte-associated protein 4[Title/Abstract]) OR CTLA-4[Title/Abstract]) OR rs733618[Title/Abstract]) OR -1722T/ C[Title/Abstract] | 7131 |
| #2 | Search ((((((((((((((((((((((“Polymorphism, Single Nucleotide” [Mesh]) OR “Genotype” [Mesh]) OR “Alleles” [Mesh]) OR polymorphism [Title/Abstract]) OR genetic variant [Title/Abstract]) OR genetic variants [Title/Abstract]) OR genetic polymorphism[Title/Abstract]) OR genetic [Title/Abstract]) OR genetic variant) OR genetic variants) OR “Genetic Variation” [Mesh]))))))) OR (((((SNP/) OR mutation/) OR variation/) OR single nucleotide polymorphism) OR variant/)))))) | 2358730 |
| #1 | Search ((((((((((((((“Stomach Neoplasms”[Mesh]) OR Stomach Neoplasms) OR Gastric Neoplasms) OR Gastric Neoplasm) OR Neoplasm, Gastric) OR Neoplasms, Gastric) OR Cancer of Stomach) OR Stomach Cancers) OR Gastric Cancer) OR Cancer, Gastric) OR Cancers, Gastric) OR Gastric Cancers) OR Stomach Cancer) OR Cancer, Stomach) OR Cancers, Stomach | 146171 |
| Search NO. | Search criterion of Embase (from 1966 to 27 Mar 2020) (n = 37) | Items found |
| #4 | #1 AND #2 AND #3 | 37 |
| #3 | ’cytotoxic t lymphocyte-associated protein 4’ OR ’ctla 4’/exp OR rs733618:ab,ti OR ’-1722t/ c’:ab, ti | 19873 |
| #2 | ’polymorphism, single nucleotide’/exp OR ’polymorphism, single nucleotide’ OR ’genotype’/exp OR ’genotype’ OR ’alleles’/exp OR ’alleles’ OR ’polymorphism’: ab, ti OR ’genetic variant’: ab, ti OR ’genetic variants’: ab, ti OR ’genetic polymorphism’: ab, ti AND ’genetic’: ab, ti OR ’genetic variant’: ab, ti OR ’genetic variants’: ab, ti OR ’genetic variation’/exp OR ’genetic variation’ OR 'snp’ OR ’mutation’/exp OR ’mutation’ OR ’variation’ OR 'single nucleotide polymorphism’/exp OR 'single nucleotide polymorphism’ OR ’variant’ | 2295298 |
| #1 | 'stomach neoplasms’: ab, ti OR’ gastric neoplasms’: ab, ti OR’ gastric neoplasm’: ab, ti OR’ cancer of stomach’: ab, ti OR’ stomach cancers’: ab, ti OR’ gastric cancer’: ab, ti OR’ gastric cancers’: ab, ti OR’ stomach cancer’: ab, ti | 93352 |
| Search NO. | Search criterion of Cochrane Library (27 Mar 2020) (n = 0) | Items found |
| #1 | MeSH descriptor: [Polymorphism, Single Nucleotide] explode all trees | 1191 |
| #2 | MeSH descriptor: [Alleles] explode all trees | 676 |
| #3 | MeSH descriptor: [Genotype] explode all trees | 4376 |
| #4 | MeSH descriptor: [Genetic Variation] explode all trees | 5034 |
| #5 | polymorphism: ti, ab, kw or genetic variant: ti, ab, kw or genetic variants: ti,ab,kw or genetic polymorphism: ti, ab, kw or genetic: ti, ab, kw or genetic variant: ti, ab, kw or genetic variants: ti, ab, kw | 20129 |
| #6 | #1 OR #2 OR #3 OR #4 OR #5 | 23151 |
| #7 | MeSH descriptor: [Stomach Neoplasms] explode all trees | 2487 |
| #8 | MeSH descriptor: [Stomach Neoplasms] explode all trees | 2487 |
| #9 | cancer of stomach:ti,ab,kw or stomach cancers:ti,ab,kw or gastric cancer:ti,ab,kw or gastric cancers:ti,ab,kw or stomach cancer:ti,ab,kw | 8552 |
| #10 | #7 OR #8 OR #9 | 8792 |
| #11 | cytotoxic T lymphocyte-associated protein 4:ti,ab,kw | 34 |
| #12 | CTLA-4:ti,ab,kw | 423 |
| #13 | #11 OR #12 | 434 |
| #14 | #6 and #10 and #13 | 0 |
| Search NO. | Search criterion of Web of Science (WOS) Database (from inception to 27 Mar 2020) (n = 21) | Items found |
| #1 | TS = (“stomach neoplasms” OR “gastric neoplasms” OR “gastric neoplasm” OR “cancer of stomach” OR “stomach cancers” OR “gastric cancer” OR “gastric cancers” OR “stomach cancer”) | 82,797 |
| #2 | TS = (((((((((((((((((((((“Polymorphism, Single Nucleotide”) OR “Genotype”) OR “Alleles”) OR polymorphism) OR genetic variant) OR genetic variants) OR genetic polymorphism) OR genetic) OR genetic variant) OR genetic variants) OR “Genetic Variation”))))))) OR (((((SNP) OR mutation) OR variation) OR single nucleotide polymorphism) OR variant))))) | 3,869,519 |
| #3 | TS = (“cytotoxic T lymphocyte-associated protein 4” OR “CTLA-4” OR “rs733618” OR “-1722T/C”) | 10,362 |
| #4 | #1 AND #2 AND #3 | 21 |
| Search NO. | Search criterion of Chinese National Knowledge Infrastructure (CNKI) Database (from inception to 27 Mar 2020) (n = 9) | Items found |
| #1 | TI = (“gastric cancer” OR “stomach neoplasm”) | - |
| #2 | US = (“genetic variant” OR “single nucleotide polymorphism”) | - |
| #3 | US = (“cytotoxic T lymphocyte-associated protein 4” OR “CTLA-4” OR “rs733618” OR “-1722T/C”) | - |
| #4 | #1 AND #2 AND #3 | 9 |
| Search NO. | Search criterion of China biomedical literature database (CBM) Database (from inception to 2020) (n = 10) | Items found |
| #1 | Mesh = (“gastric cancer” AND “single nucleotide polymorphism”) | 72 |
| #2 | Keywords = “cytotoxic T lymphocyte-associated protein 4” OR “CTLA-4” OR “rs733618” OR “-1722T/C” | 9714 |
| #3 | #1 AND #2 | 10 |
| Search NO. | Search criterion of Wanfang Database (from inception to 2020) (n = 33) | Items found |
| #1 | Title or Keywords (“gastric cancer” OR “stomach neoplasm”)∗Title or Keywords (“genetic variant” OR “single nucleotide polymorphism”)∗Title or Keywords (“cytotoxic T lymphocyte-associated protein 4” OR “CTLA-4” OR “rs733618” OR “-1722T/C”)) | 33 |
| Search NO. | Search criterion of VIP Database (from inception to 2020) (n = 15) | Items found |
| #1 | M = (“gastric cancer” OR “stomach neoplasm”) | 82,187 |
| #2 | M = (“genetic variant” OR “single nucleotide polymorphism”) | 35,827 |
| #3 | U = (“cytotoxic T lymphocyte-associated protein 4” OR “CTLA-4” OR “rs733618” OR “-1722T/C”)) | 59 |
| #4 | #1 AND #2 AND #3 | 15 |
Characteristics of published studies included in this meta-analysis.
| Cases | Control | ||||||||||
| First author | Year | Ethnicity | Control | TT TC CC | TT TC CC | WHE | Matched | ||||
| Hou | 2010 | Chinese | PB | 75 | 111 | 19 | 93 | 139 | 30 | 0.04 | Matched (age, sex and ethnicity) |
| QI | 2012 | Chinese | HB | 40 | 69 | 9 | 37 | 45 | 14 | 0.96 | Unclear |
| Hadinia | 2007 | Iranian | PB | 42 | 4 | 0 | 165 | 24 | 1 | 0.90 | Matched (age, sex) |
| Song | 2006 | Chinese | HB | 62 | 113 | 8 | 45 | 54 | 17 | 0.90 | Matched (age, sex) |
| Liu | 2019 | Chinese | HB | 168 | 242 | 77 | 525 | 685 | 262 | 0.14 | Matched (age, sex, smoking status, alcohol use, height, and weight) |
HB = hospital-based, HWE = Hardy–Weinberg equilibrium, PB = population-based.
Total and stratified analyses of association of the CTLA-4 -1722T/C polymorphism with the GC risk.
| Overall and subgroup | No. of study | OR (95% CI) | Bonferroni | FDR | ||
| Total | ||||||
| T vs. C | 5 | 1.048 (0.934–1.175) | .915 | .425 | 1.000 | 0.531 |
| TT vs. CC | 1.244 (0.964–1.606) | .343 | .093 | 0.465 | 0.155 | |
| TC vs CC | 1.399 (1.096–1.787) | .060 | .007 | 0.035 | 0.035 | |
| TT vs TC +CC | 0.950 (0.806–1.120) | .774 | .540 | 1.000 | 0.540 | |
| TC+TT vs CC | 1.325 (1.049–1.674) | .111 | .018 | 0.09 | 0.045 | |
| Ethnicity | ||||||
| Chinese | 4 | |||||
| T vs. C | 1.042 (0.928–1.169) | .954 | .487 | 1.000 | 0.487 | |
| TT vs. CC | 1.248 (0.966–1.612) | .220 | .090 | 0.45 | 0.150 | |
| TC vs CC | 1.405 (1.100–1.796) | .033 | .007 | 0.035 | 0.035 | |
| TT vs TC +CC | 0.937 (0.793–1.107) | .817 | .447 | 1.000 | 0.487 | |
| TC+TT vs CC | 1.329 (1.052–1.680) | .060 | .017 | 0.085 | 0.043 | |
| Iranian | ||||||
| T vs. C | 1 | 1.616 (0.550–4.750) | .383 | 1.000 | 0.874 | |
| TT vs. CC | 0.770 (0.031–19.249) | - | .874 | 1.000 | 0.874 | |
| TC vs CC | 0.551 (0.019–15.780) | - | .728 | 1.000 | 0.874 | |
| TT vs TC +CC | 1.591 (0.525–4.820) | - | .412 | 1.000 | 0.874 | |
| TC+TT vs CC | 0.736 (0.030–18.363) | - | .852 | 1.000 | 0.874 | |
| Control | ||||||
| PB | 2 | |||||
| T vs. C | 1.102 (0.851–1.428) | .469 | .461 | 1.000 | 0.597 | |
| TT vs. CC | 1.250 (0.660–2.367) | .764 | .493 | 1.000 | 0.597 | |
| TC vs CC | 1.230 (0.664–2.280) | .634 | .510 | 1.000 | 0.597 | |
| TT vs TC +CC | 1.101 (0.770–1.157) | .485 | .597 | 1.000 | 0.597 | |
| TC+TT vs CC | 1.244 (0.685–2.259) | .745 | .472 | 1.000 | 0.597 | |
| HB | ||||||
| T vs. C | 3 | 1.035 (0.910–1.176) | .870 | .600 | 1.000 | 0.600 |
| TT vs. CC | 1.243 (0.941–1.643) | .111 | .125 | 0.625 | 0.208 | |
| TC vs CC | 1.432 (1.097–1.870) | .013 | .008 | 0.040 | 0.040 | |
| TT vs TC +CC | 0.913 (0.758–1.099) | .770 | .335 | 1.000 | 0.419 | |
| TC+TT vs CC | 1.340 (1.040–1.728) | .025 | 0.018 | 0.090 | 0.045 |
FDR = false discovery rate, GC = gastric cancer, HB = hospital-based, No. = number, OR = odds ratio, PB = population-based.
Figure 1Meta-analysis with a fixed effects model for the ORs for GC risk in different ethnicities associated with CTLA-4 -1722T/C (T vs C).
Figure 2Meta-analysis with a fixed effects model for the ORs for GC risk based on different sources of controls associated with CTLA-4 -1722T/C (T vs C).
Figure 3Sensitivity analysis of the meta-analysis of GC risk and the CTLA-4 -1722T/C polymorphism (C vs T).
Figure 4Funnel plot for publication bias in the meta-analysis of GC risk and the CTLA-4 -1722T/C polymorphism (C vs T).
Figure 5Trial sequential analysis (TSA) for CTLA-4 -1722T/C polymorphism under the allele contrast model (C vs T).