Literature DB >> 33326225

Electron Redistribution within the Nitrogenase Active Site FeMo-Cofactor During Reductive Elimination of H2 to Achieve N≡N Triple-Bond Activation.

Dmitriy A Lukoyanov1, Zhi-Yong Yang2, Dennis R Dean3, Lance C Seefeldt4, Simone Raugei5, Brian M Hoffman1.   

Abstract

Nitrogen fixation by nitrogenase begins with the accumulation of four reducing equivalents at the active-site FeMo-cofactor (FeMo-co), generating a state (denoted E4(4H)) with two [Fe-H-Fe] bridging hydrides. Recently, photolytic reductive elimination (re) of the E4(4H) hydrides showed that enzymatic re of E4(4H) hydride yields an H2-bound complex (E4(H2,2H)), in a process corresponding to a formal 2-electron reduction of the metal-ion core of FeMo-co. The resulting electron-density redistribution from Fe-H bonds to the metal ions themselves enables N2 to bind with concomitant H2 release, a process illuminated here by QM/MM molecular dynamics simulations. What is the nature of this redistribution? Although E4(H2,2H) has not been trapped, cryogenic photolysis of E4(4H) provides a means to address this question. Photolysis of E4(4H) causes hydride-re with release of H2, generating doubly reduced FeMo-co (denoted E4(2H)*), the extreme limit of the electron-density redistribution upon formation of E4(H2,2H). Here we examine the doubly reduced FeMo-co core of the E4(2H)* limiting-state by 1H, 57Fe, and 95Mo ENDOR to illuminate the partial electron-density redistribution upon E4(H2,2H) formation during catalysis, complementing these results with corresponding DFT computations. Inferences from the E4(2H)* ENDOR results as extended by DFT computations include (i) the Mo-site participates negligibly, and overall it is unlikely that Mo changes valency throughout the catalytic cycle; and (ii) two distinctive E4(4H) 57Fe signals are suggested as associated with structurally identified "anchors" of one bridging hydride, two others with identified anchors of the second, with NBO-analysis further identifying one anchor of each hydride as a major recipient of electrons released upon breaking Fe-H bonds.

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Year:  2020        PMID: 33326225      PMCID: PMC7783777          DOI: 10.1021/jacs.0c07914

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  40 in total

1.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Combining steady-state and dynamic methods for determining absolute signs of hyperfine interactions: pulsed ENDOR Saturation and Recovery (PESTRE).

Authors:  Peter E Doan
Journal:  J Magn Reson       Date:  2010-10-14       Impact factor: 2.229

3.  Revised Basis Sets for the LANL Effective Core Potentials.

Authors:  Lindsay E Roy; P Jeffrey Hay; Richard L Martin
Journal:  J Chem Theory Comput       Date:  2008-07       Impact factor: 6.006

4.  Density-functional exchange-energy approximation with correct asymptotic behavior.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-09-15

5.  Substrate channel in nitrogenase revealed by a molecular dynamics approach.

Authors:  Dayle Smith; Karamatullah Danyal; Simone Raugei; Lance C Seefeldt
Journal:  Biochemistry       Date:  2014-04-02       Impact factor: 3.162

Review 6.  Advanced paramagnetic resonance spectroscopies of iron-sulfur proteins: Electron nuclear double resonance (ENDOR) and electron spin echo envelope modulation (ESEEM).

Authors:  George E Cutsail; Joshua Telser; Brian M Hoffman
Journal:  Biochim Biophys Acta       Date:  2015-02-14

7.  Correction to "High-Resolution ENDOR Spectroscopy Combined with Quantum Chemical Calculations Reveals the Structure of Nitrogenase Janus Intermediate E4(4H)".

Authors:  Veronika Hoeke; Laura Tociu; David A Case; Lance C Seefeldt; Simone Raugei; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2019-12-10       Impact factor: 15.419

8.  ENDOR/HYSCORE studies of the common intermediate trapped during nitrogenase reduction of N2H2, CH3N2H, and N2H4 support an alternating reaction pathway for N2 reduction.

Authors:  Dmitriy Lukoyanov; Sergei A Dikanov; Zhi-Yong Yang; Brett M Barney; Rimma I Samoilova; Kuppala V Narasimhulu; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2011-07-11       Impact factor: 15.419

9.  Photoinduced Reductive Elimination of H2 from the Nitrogenase Dihydride (Janus) State Involves a FeMo-cofactor-H2 Intermediate.

Authors:  Dmitriy Lukoyanov; Nimesh Khadka; Dennis R Dean; Simone Raugei; Lance C Seefeldt; Brian M Hoffman
Journal:  Inorg Chem       Date:  2017-02-08       Impact factor: 5.165

10.  Spectroscopic Description of the E1 State of Mo Nitrogenase Based on Mo and Fe X-ray Absorption and Mössbauer Studies.

Authors:  Casey Van Stappen; Roman Davydov; Zhi-Yong Yang; Ruixi Fan; Yisong Guo; Eckhard Bill; Lance C Seefeldt; Brian M Hoffman; Serena DeBeer
Journal:  Inorg Chem       Date:  2019-08-23       Impact factor: 5.165

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  5 in total

1.  Dinitrogen Coordination to a High-Spin Diiron(I/II) Species.

Authors:  Juan F Torres; Collin H Oi; Ian P Moseley; Nabila El-Sakkout; Brian J Knight; Jason Shearer; Ricardo García-Serres; Joseph M Zadrozny; Leslie J Murray
Journal:  Angew Chem Int Ed Engl       Date:  2022-03-31       Impact factor: 16.823

Review 2.  Review on the QM/MM Methodologies and Their Application to Metalloproteins.

Authors:  Christina Eleftheria Tzeliou; Markella Aliki Mermigki; Demeter Tzeli
Journal:  Molecules       Date:  2022-04-20       Impact factor: 4.927

3.  Dinitrogen binding and activation at a molybdenum-iron-sulfur cluster.

Authors:  Alex McSkimming; Daniel L M Suess
Journal:  Nat Chem       Date:  2021-05-27       Impact factor: 24.427

4.  Thermodynamically Favourable States in the Reaction of Nitrogenase without Dissociation of any Sulfide Ligand.

Authors:  Hao Jiang; Ulf Ryde
Journal:  Chemistry       Date:  2022-02-02       Impact factor: 5.020

5.  A Mechanism for Nitrogenase Including Loss of a Sulfide.

Authors:  Wen-Jie Wei; Per E M Siegbahn
Journal:  Chemistry       Date:  2022-02-02       Impact factor: 5.020

  5 in total

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