| Literature DB >> 33324152 |
Yangong Wang1, Yiran Xu2, Yangyi Fan1, Dan Bi3, Juan Song2, Lei Xia2, Qing Shang4, Chao Gao4, Xiaoli Zhang2, Dengna Zhu5, Yimeng Qiao1, Yu Su1, Xiaoyang Wang2, Changlian Zhu2,6,7, Qinghe Xing1,8.
Abstract
Background: Cerebral palsy (CP) is a syndrome of non-progressive motor dysfunction caused by early brain development injury. Recent evidence has shown that immunological abnormalities are associated with an increased risk of CP.Entities:
Keywords: IL23R; cerebral palsy; gene polymorphism; inflammatory cytokines; interleukin
Year: 2020 PMID: 33324152 PMCID: PMC7724030 DOI: 10.3389/fnins.2020.590098
Source DB: PubMed Journal: Front Neurosci ISSN: 1662-453X Impact factor: 4.677
Clinical characteristics of all participants.
| Sex (male:female) | 542:240 | 515:256 |
| Preterm (<37 weeks) | 47 | 10 |
| <2,500 g | 40 | 2 |
| Birth asphyxia | 234 | 13 |
| Spastic CP | 522 | NA |
| CP with quadriplegia | 284 | NA |
| CP with diplegia | 126 | NA |
| CP with PVL | 67 | NA |
| CP with HIE | 108 | NA |
| CP with GDD | 299 | NA |
| Type of CP | 310 | NA |
| PROM | 71 | 26 |
| TPL | 58 | 0 |
| PIH | 26 | 7 |
CP, cerebral palsy; PVL, periventricular leukomalacia; HIE, hypoxic–ischemic encephalopathy; GDD, global developmental delay; PROM, premature rupture of membrane; TPL, threatened premature labor; PIH, pregnancy-induced hypertension.
Figure 1SNPs in IL-23R. Highest population minor allele frequency: highest minor allele frequency observed in any population including 1,000 Genomes Phase 3, ESP, and genomAD.
Figure 2Distribution of blocks defined by linkage disequilibrium scores of six SNPs in IL-23R. The data indicate D′ values.
Allele and genotype frequency analysis of SNPs of IL-23R.
| rs10889657 | C | T | C/C | C/T | T/T | ||||
| CP | 347 (0.267) | 953 (0.733) | 0.09 | 0.861 [0.725–1.023] | 59 (0.091) | 229 (0.352) | 362 (0.557) | 0.028 | 0.011 |
| Control | 372 (0.297) | 880 (0.703) | 53 (0.085) | 266(0.425) | 307 (0.490) | 0.665 | |||
| rs6682925 | C | T | C/C | C/T | T/T | ||||
| CP | 625 (0.422) | 855 (0.578) | 0.406 | 0.940 [0.813–1.088] | 133 (0.180) | 359 (0.485) | 248 (0.335) | 0.681 | 0.876 |
| Control | 634 (0.437) | 827 (0.563) | 139 (0.189) | 365 (0.497) | 231 (0.314) | 0.807 | |||
| rs1884444 | G | T | G/G | G/T | T/T | ||||
| CP | 517 (0.344) | 985 (0.656) | 0.169 | 0.900 [0.776–1.046] | 91 (0.121) | 335 (0.446) | 325 (0.433) | 0.275 | 0.744 |
| Control | 556 (0.368) | 954 (0.632) | 97 (0.128) | 362 (0.479) | 296 (0.392) | 0.402 | |||
| rs1004819 | A | G | A/A | A/G | G/G | ||||
| CP | 532 (0.566) | 408 (0.434) | 0.05 | 1.194 [1.000–1.425] | 168 (0.357) | 196 (0.417) | 106 (0.226) | 0.063 | 0.001 |
| Control | 544 (0.522) | 498 (0.478) | 150 (0.288) | 244 (0.468) | 127 (0.244) | 0.16 | |||
| rs11805303 | C | T | C/C | C/T | T/T | ||||
| CP | 628 (0.415) | 884 (0.585) | 0.014 | 0.835 [0.723–0.964] | 150 (0.198) | 328 (0.434) | 278 (0.368) | 0.023 | 0.003 |
| Control | 696 (0.460) | 818 (0.540) | 167 (0.221) | 362 (0.478) | 228 (0.301) | 0.304 | |||
| rs10889677 | A | C | A/A | A/C | C/C | ||||
| CP | 1121 (0.750) | 373 (0.250) | 0.048 | 1.178 [1.002–1.386] | 429 (0.574) | 263 (0.352) | 55 (0.074) | 0.008 | 0.099 |
| Control | 1079 (0.718) | 423 (0.282) | 378 (0.503) | 323 (0.430) | 50 (0.067) | 0.085 | |||
OR, odds ratio; CI, confidence interval.The P values corrected by Bonferroni are
0.168,
0.084,
0.138,
0.288,
0.048.
Haplotype analysis of rs11805303 and rs10889677 SNPs.
| CA | 250.91 | 271.19 (0.183) | 0.413244 | 0.924 (0.765–1.117) |
| CC | 356.09 (0.242) | 410.81 (0.277) | 0.036346 | 0.838 (0.711–0.989) |
| TA | 850.09 (0.578) | 793.81 (0.536) | 0.013013 | 1.203 (1.040–1.392) |
| Fisher's | 0.039 | |||
| Pearson's | 0.039 |
Allele and genotype frequencies of IL-23R in CP with GDD and the control group.
| rs10889657 | C | T | C/C | C/T | T/T | ||||
| CP | 132 (0.253) | 390 (0.747) | 0.06 | 0.801 (0.635–1.009) | 23 (0.088) | 86 (0.330) | 152 (0.582) | 0.026 | 0.038 |
| Control | 372 (0.297) | 880 (0.703) | 53 (0.085) | 266 (0.425) | 307 (0.490) | 0.665 | |||
| rs6682925 | C | T | C/C | C/T | T/T | ||||
| CP | 239 (0.424) | 325 (0.576) | 0.578 | 0.946 (0.777–1.151) | 54 (0.191) | 131 (0.465) | 97 (0.344) | 0.608 | 0.412 |
| Control | 634 (0.437) | 827 (0.563) | 139 (0.189) | 365 (0.497) | 231 (0.314) | 0.807 | |||
| rs184444 | G | T | G/G | G/T | T/T | ||||
| CP | 196 (0.343) | 376 (0.657) | 0.279 | 0.894 (0.731–1.094) | 38 (0.133) | 120 (0.420) | 128 (0.448) | 0.201 | 0.246 |
| Control | 556 (0.368) | 954 (0.632) | 97 (0.128) | 362 (0.479) | 296 (0.392) | 0.402 | |||
| rs1004819 | A | G | A/A | A/G | G/G | ||||
| CP | 219 (0.592) | 151 (0.408) | 0.021 | 1.328 (1.044–1.688) | 71 (0.384) | 77 (0.416) | 37 (0.200) | 0.051 | 0.06 |
| Control | 544 (0.522) | 498 (0.478) | 150 (0.288) | 244 (0.468) | 127 (0.244) | 0.16 | |||
| rs11805303 | C | T | C/C | C/T | T/T | ||||
| CP | 232 (0.403) | 344 (0.597) | 0.019 | 0.793 (0.652–0.963) | 53 (0.184) | 126 (0.438) | 109 (0.378) | 0.051 | 0.124 |
| Control | 696 (0.460) | 818 (0.540) | 167 (0.221) | 362 (0.478) | 228 (0.301) | 0.304 | |||
| rs10889677 | A | C | A/A | A/C | C/C | ||||
| CP | 439 (0.767) | 133 (0.233) | 0.024 | 1.293 (1.034–1.619) | 174 (0.608) | 91 (0.318) | 21 (0.073) | 0.004 | 0.067 |
| Control | 1,079 (0.718) | 423 (0.282) | 378 (0.503) | 323 (0.430) | 50 (0.067) | 0.084 |
P value after Bonferroni
0.077,
0.126,
0.114,
0.144,
0.024.
Allele and genotype frequencies of IL-23R in CP with NE and the control group.
| rs10889657 | C | T | C/C | C/T | T/T | ||||
| CP | 146 (0.271) | 392 (0.729) | 0.271 | 0.881 (0.703–1.104) | 25 (0.093) | 96 (0.357) | 148 (0.550) | 0.163 | 0.109 |
| Control | 372 (0.297) | 880 (0.703) | 53 (0.085) | 266 (0.425) | 307 (0.490) | 0.665 | |||
| rs6682925 | C | T | C/C | C/T | T/T | ||||
| CP | 257 (0.425) | 347 (0.575) | 0.619 | 0.952 (0.787–1.154) | 48 (0.159) | 161 (0.533) | 93 (0.308) | 0.434 | 0.116 |
| Control | 634 (0.437) | 827 (0.563) | 139 (0.189) | 365 (0.497) | 231 (0.314) | 0.807 | |||
| rs184444 | G | T | G/G | G/T | T/T | ||||
| CP | 219 (0.369) | 375 (0.631) | 0.984 | 1.002 (0.823–1.220) | 36 (0.121) | 140 (0.495) | 114 (0.384) | 0.891 | 0.276 |
| Control | 556 (0.368) | 954 (0.632) | 97 (0.128) | 362 (0.479) | 296 (0.392) | 0.402 | |||
| rs1004819 | A | G | A/A | A/G | G/G | ||||
| CP | 201 (0.552) | 163 (0.448) | 0.322 | 1.128 (0.888–1.434) | 62 (0.341) | 77 (0.423) | 43 (0.236) | 0.391 | 0.051 |
| Control | 544 (0.522) | 498 (0.478) | 150 (0.288) | 244 (0.468) | 127 (0.244) | 0.16 | |||
| rs11805303 | C | T | C/C | C/T | T/T | ||||
| CP | 244 (0.405) | 358 (0.595) | 0.023 | 0.801 (0.661–0.970) | 52 (0.173) | 140 (0.465) | 109 (0.362) | 0.083 | 0.541 |
| Control | 696 (0.460) | 818 (0.540) | 167 (0.221) | 362 (0.478) | 228 (0.301) | 0.304 | |||
| rs10889677 | A | C | A/A | A/C | C/C | ||||
| CP | 450 (0.750) | 150 (0.250) | 0.141 | 1.176 (0.947–1.460) | 177 (0.590) | 96 (0.320) | 27 (0.090) | 0.004 | 0.011 |
| Control | 1,079 (0.718) | 423 (0.282) | 378 (0.503) | 323 (0.430) | 50 (0.067) | 0.084 |
P value after Bonferroni
0.138,
0.024.
Figure 3The diseases linked to different sites of IL-23R. The SNPs studied in the present study are marked in red.