Literature DB >> 33322137

Seascape Genomics of the Sugar Kelp Saccharina latissima along the North Eastern Atlantic Latitudinal Gradient.

Jaromir Guzinski1,2, Paolo Ruggeri1,3, Marion Ballenghien1,4, Stephane Mauger1, Bertrand Jacquemin1,5, Chloe Jollivet1,6, Jerome Coudret1, Lucie Jaugeon1, Christophe Destombe1, Myriam Valero1.   

Abstract

Temperature is one of the most important range-limiting factors for many seaweeds. Driven by the recent climatic changes, rapid northward shifts of species' distribution ranges can potentially modify the phylogeographic signature of Last Glacial Maximum. We explored this question in detail in the cold-tolerant kelp species Saccharina latissima, using microsatellites and double digest restriction site-associated DNA sequencing ( ddRAD-seq) derived single nucleotide polymorphisms (SNPs) to analyze the genetic diversity and structure in 11 sites spanning the entire European Atlantic latitudinal range of this species. In addition, we checked for statistical correlation between genetic marker allele frequencies and three environmental proxies (sea surface temperature, salinity, and water turbidity). Our findings revealed that genetic diversity was significantly higher for the northernmost locality (Spitsbergen) compared to the southern ones (Northern Iberia), which we discuss in light of the current state of knowledge on phylogeography of S. latissima and the potential influence of the recent climatic changes on the population structure of this species. Seven SNPs and 12 microsatellite alleles were found to be significantly associated with at least one of the three environmental variables. We speculate on the putative adaptive functions of the genes associated with the outlier markers and the importance of these markers for successful conservation and aquaculture strategies for S. latissima in this age of rapid global change.

Entities:  

Keywords:  SNPs and microsatellites; environmental variables; genetic diversity; local adaptation; outlier loci; phylogeography

Year:  2020        PMID: 33322137      PMCID: PMC7763533          DOI: 10.3390/genes11121503

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  67 in total

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Authors:  Fred W Allendorf; Paul A Hohenlohe; Gordon Luikart
Journal:  Nat Rev Genet       Date:  2010-10       Impact factor: 53.242

2.  Role of temperature stress on chloroplast biogenesis and protein import in pea.

Authors:  Siddhartha Dutta; Sasmita Mohanty; Baishnab C Tripathy
Journal:  Plant Physiol       Date:  2009-04-29       Impact factor: 8.340

3.  Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations.

Authors:  Stéphane De Mita; Anne-Céline Thuillet; Laurène Gay; Nourollah Ahmadi; Stéphanie Manel; Joëlle Ronfort; Yves Vigouroux
Journal:  Mol Ecol       Date:  2013-01-07       Impact factor: 6.185

4.  Robust identification of local adaptation from allele frequencies.

Authors:  Torsten Günther; Graham Coop
Journal:  Genetics       Date:  2013-07-02       Impact factor: 4.562

5.  Assessing thermal adaptation using family-based association and FST outlier tests in a threatened trout species.

Authors:  Stephen J Amish; Omar Ali; Mary Peacock; Michael Miller; Morgan Robinson; Seth Smith; Gordon Luikart; Helen Neville
Journal:  Mol Ecol       Date:  2019-05-11       Impact factor: 6.185

6.  Northern areas as refugia for temperate species under current climate warming: Atlantic salmon (Salmo salar L.) as a model in northern Europe.

Authors:  Jose L Horreo; Andrew M Griffiths; Gonzalo Machado-Schiaffino; Jamie R Stevens; Eva Garcia-Vazquez
Journal:  J Fish Biol       Date:  2018-11-26       Impact factor: 2.051

Review 7.  Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication.

Authors:  Ryan J Haasl; Bret A Payseur
Journal:  Mol Ecol       Date:  2015-09-16       Impact factor: 6.185

8.  Interactive effects of radiation, temperature and salinity on different life history stages of the Arctic kelp Alaria esculenta (Phaeophyceae).

Authors:  Jana Fredersdorf; Ruth Müller; Susanne Becker; Christian Wiencke; Kai Bischof
Journal:  Oecologia       Date:  2009-03-29       Impact factor: 3.225

9.  Development of PCR-Based Markers to Determine the Sex of Kelps.

Authors:  Agnieszka P Lipinska; Sophia Ahmed; Akira F Peters; Sylvain Faugeron; J Mark Cock; Susana M Coelho
Journal:  PLoS One       Date:  2015-10-23       Impact factor: 3.240

10.  Transcriptome sequencing of Saccharina japonica sporophytes during whole developmental periods reveals regulatory networks underlying alginate and mannitol biosynthesis.

Authors:  Zhanru Shao; Pengyan Zhang; Chang Lu; Shaoxuan Li; Zhihang Chen; Xiuliang Wang; Delin Duan
Journal:  BMC Genomics       Date:  2019-12-12       Impact factor: 3.969

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  1 in total

1.  Arctic marine forest distribution models showcase potentially severe habitat losses for cryophilic species under climate change.

Authors:  Trevor T Bringloe; David P Wilkinson; Jesica Goldsmit; Amanda M Savoie; Karen Filbee-Dexter; Kathleen A Macgregor; Kimberly L Howland; Christopher W McKindsey; Heroen Verbruggen
Journal:  Glob Chang Biol       Date:  2022-03-08       Impact factor: 13.211

  1 in total

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