Literature DB >> 33309739

Single-cell RNA sequencing of psoriatic skin identifies pathogenic Tc17 cell subsets and reveals distinctions between CD8+ T cells in autoimmunity and cancer.

Jared Liu1, Hsin-Wen Chang1, Zhi-Ming Huang1, Mio Nakamura2, Sahil Sekhon3, Richard Ahn4, Priscila Munoz-Sandoval1, Shrishti Bhattarai1, Kristen M Beck5, Isabelle M Sanchez6, Eric Yang1, Mariela Pauli1, Sarah T Arron1, Wai-Ping Fung-Leung7, Ernesto Munoz7, Xuejun Liu7, Tina Bhutani1, Jeffrey North1, Anne M Fourie7, Michael D Rosenblum1, Wilson Liao8.   

Abstract

BACKGROUND: Psoriasis is an inflammatory, IL-17-driven skin disease in which autoantigen-induced CD8+ T cells have been identified as pathogenic drivers.
OBJECTIVE: Our study focused on comprehensively characterizing the phenotypic variation of CD8+ T cells in psoriatic lesions.
METHODS: We used single-cell RNA sequencing to compare CD8+ T-cell transcriptomic heterogeneity between psoriatic and healthy skin.
RESULTS: We identified 11 transcriptionally diverse CD8+ T-cell subsets in psoriatic and healthy skin. Among several inflammatory subsets enriched in psoriatic skin, we observed 2 Tc17 cell subsets that were metabolically divergent, were developmentally related, and expressed CXCL13, which we found to be a biomarker of psoriasis severity and which achieved comparable or greater accuracy than IL17A in a support vector machine classifier of psoriasis and healthy transcriptomes. Despite high coinhibitory receptor expression in the Tc17 cell clusters, a comparison of these cells with melanoma-infiltrating CD8+ T cells revealed upregulated cytokine, cytolytic, and metabolic transcriptional activity in the psoriatic cells that differed from an exhaustion program.
CONCLUSION: Using high-resolution single-cell profiling in tissue, we have uncovered the diverse landscape of CD8+ T cells in psoriatic and healthy skin, including 2 nonexhausted Tc17 cell subsets associated with disease severity.
Copyright © 2020 American Academy of Allergy, Asthma & Immunology. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CD8(+) T cell; Single-cell RNA sequencing; Smart-seq2; T-cell exhaustion; melanoma; psoriasis

Mesh:

Substances:

Year:  2020        PMID: 33309739      PMCID: PMC9179181          DOI: 10.1016/j.jaci.2020.11.028

Source DB:  PubMed          Journal:  J Allergy Clin Immunol        ISSN: 0091-6749            Impact factor:   14.290


  59 in total

1.  Normalization of RNA-seq data using factor analysis of control genes or samples.

Authors:  Davide Risso; John Ngai; Terence P Speed; Sandrine Dudoit
Journal:  Nat Biotechnol       Date:  2014-08-24       Impact factor: 54.908

2.  Assessment of the psoriatic transcriptome in a large sample: additional regulated genes and comparisons with in vitro models.

Authors:  Johann E Gudjonsson; Jun Ding; Andrew Johnston; Trilokraj Tejasvi; Andrew M Guzman; Rajan P Nair; John J Voorhees; Goncalo R Abecasis; James T Elder
Journal:  J Invest Dermatol       Date:  2010-03-11       Impact factor: 8.551

3.  Keratinocytes derived from psoriatic plaques are resistant to apoptosis compared with normal skin.

Authors:  T Wrone-Smith; R S Mitra; C B Thompson; R Jasty; V P Castle; B J Nickoloff
Journal:  Am J Pathol       Date:  1997-11       Impact factor: 4.307

4.  Human skin is protected by four functionally and phenotypically discrete populations of resident and recirculating memory T cells.

Authors:  Rei Watanabe; Ahmed Gehad; Chao Yang; Laura L Scott; Jessica E Teague; Christoph Schlapbach; Christopher P Elco; Victor Huang; Tiago R Matos; Thomas S Kupper; Rachael A Clark
Journal:  Sci Transl Med       Date:  2015-03-18       Impact factor: 17.956

5.  Bias, robustness and scalability in single-cell differential expression analysis.

Authors:  Charlotte Soneson; Mark D Robinson
Journal:  Nat Methods       Date:  2018-02-26       Impact factor: 28.547

6.  Tildrakizumab versus placebo or etanercept for chronic plaque psoriasis (reSURFACE 1 and reSURFACE 2): results from two randomised controlled, phase 3 trials.

Authors:  Kristian Reich; Kim A Papp; Andrew Blauvelt; Stephen K Tyring; Rodney Sinclair; Diamant Thaçi; Kristine Nograles; Anish Mehta; Nicole Cichanowitz; Qing Li; Kenneth Liu; Carmen La Rosa; Stuart Green; Alexa B Kimball
Journal:  Lancet       Date:  2017-06-06       Impact factor: 79.321

7.  A Transcriptionally Distinct CXCL13+CD103+CD8+ T-cell Population Is Associated with B-cell Recruitment and Neoantigen Load in Human Cancer.

Authors:  Hagma H Workel; Joyce M Lubbers; Roland Arnold; Thalina M Prins; Pieter van der Vlies; Kim de Lange; Tjalling Bosse; Inge C van Gool; Florine A Eggink; Maartje C A Wouters; Fenne L Komdeur; Elisabeth C van der Slikke; Carien L Creutzberg; Arjan Kol; Annechien Plat; Mark Glaire; David N Church; Hans W Nijman; Marco de Bruyn
Journal:  Cancer Immunol Res       Date:  2019-03-14       Impact factor: 11.151

8.  Tc17 CD8 T cells: functional plasticity and subset diversity.

Authors:  Hung-Rong Yen; Timothy J Harris; Satoshi Wada; Joseph F Grosso; Derese Getnet; Monica V Goldberg; Kai-Li Liang; Tullia C Bruno; Kristin J Pyle; Siaw-Li Chan; Robert A Anders; Cornelia L Trimble; Adam J Adler; Tzou-Yien Lin; Drew M Pardoll; Ching-Tai Huang; Charles G Drake
Journal:  J Immunol       Date:  2009-11-16       Impact factor: 5.422

9.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

Review 10.  The Interplay Between Keratinocytes and Immune Cells in the Pathogenesis of Psoriasis.

Authors:  Cristina Albanesi; Stefania Madonna; Paolo Gisondi; Giampiero Girolomoni
Journal:  Front Immunol       Date:  2018-07-06       Impact factor: 7.561

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  20 in total

1.  The need to reassess single-cell RNA sequencing datasets: the importance of biological sample processing.

Authors:  Alex M Ascensión; Marcos J Araúzo-Bravo; Ander Izeta
Journal:  F1000Res       Date:  2021-08-06

2.  TREM2 macrophages induced by human lipids drive inflammation in acne lesions.

Authors:  Tran H Do; Feiyang Ma; Priscila R Andrade; Rosane Teles; Bruno J de Andrade Silva; Chanyue Hu; Alejandro Espinoza; Jer-En Hsu; Chun-Seok Cho; Myungjin Kim; Jingyue Xi; Xianying Xing; Olesya Plazyo; Lam C Tsoi; Carol Cheng; Jenny Kim; Bryan D Bryson; Alan M O'Neill; Marco Colonna; Johann E Gudjonsson; Eynav Klechevsky; Jun Hee Lee; Richard L Gallo; Barry R Bloom; Matteo Pellegrini; Robert L Modlin
Journal:  Sci Immunol       Date:  2022-07-22

3.  Multiomic Analysis of the Gut Microbiome in Psoriasis Reveals Distinct Host‒Microbe Associations.

Authors:  Hsin-Wen Chang; Di Yan; Rasnik Singh; Audrey Bui; Kristina Lee; Alexa Truong; Jeffrey M Milush; Ma Somsouk; Wilson Liao
Journal:  JID Innov       Date:  2022-03-10

4.  Transcriptomic Profiling of Plaque Psoriasis and Cutaneous T-Cell Subsets during Treatment with Secukinumab.

Authors:  Jared Liu; Hsin-Wen Chang; Robby Grewal; Daniel D Cummins; Audrey Bui; Kristen M Beck; Sahil Sekhon; Di Yan; Zhi-Ming Huang; Timothy H Schmidt; Eric J Yang; Isabelle M Sanchez; Mio Nakamura; Shrishti Bhattarai; Quinn Thibodeaux; Richard Ahn; Mariela Pauli; Tina Bhutani; Michael D Rosenblum; Wilson Liao
Journal:  JID Innov       Date:  2021-12-30

5.  Classification of human chronic inflammatory skin disease based on single-cell immune profiling.

Authors:  Yale Liu; Hao Wang; Mark Taylor; Christopher Cook; Alejandra Martínez-Berdeja; Jeffrey P North; Paymann Harirchian; Ashley A Hailer; Zijun Zhao; Ruby Ghadially; Roberto R Ricardo-Gonzalez; Roy C Grekin; Theodora M Mauro; Esther Kim; Jaehyuk Choi; Elizabeth Purdom; Raymond J Cho; Jeffrey B Cheng
Journal:  Sci Immunol       Date:  2022-04-15

Review 6.  New Frontiers in Psoriatic Disease Research, Part I: Genetics, Environmental Triggers, Immunology, Pathophysiology, and Precision Medicine.

Authors:  Di Yan; Johann E Gudjonsson; Stephanie Le; Emanual Maverakis; Olesya Plazyo; Christopher Ritchlin; Jose U Scher; Roopesh Singh; Nicole L Ward; Stacie Bell; Wilson Liao
Journal:  J Invest Dermatol       Date:  2021-07-22       Impact factor: 8.551

7.  Single cell transcriptional zonation of human psoriasis skin identifies an alternative immunoregulatory axis conducted by skin resident cells.

Authors:  Yuzhen Li; Yizhou Hu; Yuge Gao; Xinyu Yao; Yumeng Zhai; Li Li; Huini Li; Xianqi Sun; Pei Yu; Tiankuo Xue
Journal:  Cell Death Dis       Date:  2021-05-06       Impact factor: 8.469

8.  Genome-wide transcriptome and translatome analyses reveal the role of protein extension and domestication in liver cancer oncogenesis.

Authors:  Nima Wang; Dalei Wang
Journal:  Mol Genet Genomics       Date:  2021-02-11       Impact factor: 3.291

Review 9.  Maximizing the Utility of Transcriptomics Data in Inflammatory Skin Diseases.

Authors:  Jingni Wu; Zhixiao Fang; Teng Liu; Wei Hu; Yangjun Wu; Shengli Li
Journal:  Front Immunol       Date:  2021-10-29       Impact factor: 7.561

Review 10.  Challenges and Opportunities for the Translation of Single-Cell RNA Sequencing Technologies to Dermatology.

Authors:  Alex M Ascensión; Marcos J Araúzo-Bravo; Ander Izeta
Journal:  Life (Basel)       Date:  2022-01-04
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