Literature DB >> 3330959

An algorithm for discriminating sequences and its application to yeast transfer RNA.

H B Nicholas1, W H McClain.   

Abstract

We describe an algorithm for finding nucleotide residues strongly correlated with the amino acid acceptor functions of transfer RNAs. The algorithm exploits the fact that each tRNA accepts only one of 20 amino acids. The algorithm is applied to 37 Saccharomyces cerevisiae transfer RNAs.

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Year:  1987        PMID： 3330959     DOI： 10.1093/bioinformatics/3.3.177

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  7 in total

1.  Arginine aminoacylation identity is context-dependent and ensured by alternate recognition sets in the anticodon loop of accepting tRNA transcripts.

Authors:  M Sissler; R Giegé; C Florentz
Journal:  EMBO J       Date:  1996-09-16       Impact factor: 11.598

2.  Solution conformation of several free tRNALeu species from bean, yeast and Escherichia coli and interaction of these tRNAs with bean cytoplasmic Leucyl-tRNA synthetase. A phosphate alkylation study with ethylnitrosourea.

Authors:  A Dietrich; P Romby; L Maréchal-Drouard; P Guillemaut; R Giegé
Journal:  Nucleic Acids Res       Date:  1990-05-11       Impact factor: 16.971

3.  Coexpression of eukaryotic tRNASer and yeast seryl-tRNA synthetase leads to functional amber suppression in Escherichia coli.

Authors:  I Weygand-Durasević; M Nalaskowska; D Söll
Journal:  J Bacteriol       Date:  1994-01       Impact factor: 3.490

4.  A novel L-xylulose reductase essential for L-arabinose catabolism in Trichoderma reesei.

Authors:  Benjamin Metz; Dominik Mojzita; Silvia Herold; Christian P Kubicek; Peter Richard; Bernhard Seiboth
Journal:  Biochemistry       Date:  2013-03-29       Impact factor: 3.162

5.  TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase.

Authors:  David H Ardell; Siv G E Andersson
Journal:  Nucleic Acids Res       Date:  2006-02-09       Impact factor: 16.971

6.  Visualizing bacterial tRNA identity determinants and antideterminants using function logos and inverse function logos.

Authors:  Eva Freyhult; Vincent Moulton; David H Ardell
Journal:  Nucleic Acids Res       Date:  2006-02-09       Impact factor: 16.971

7.  The Hypocrea jecorina (Trichoderma reesei) hypercellulolytic mutant RUT C30 lacks a 85 kb (29 gene-encoding) region of the wild-type genome.

Authors:  Verena Seidl; Christian Gamauf; Irina S Druzhinina; Bernhard Seiboth; Lukas Hartl; Christian P Kubicek
Journal:  BMC Genomics       Date:  2008-07-11       Impact factor: 3.969
  7 in total

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